Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5777

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
2,804,823	+		GFF5776	0.13	+0.3
2,804,823	+		GFF5776	0.13	+0.0
2,804,823	+		GFF5776	0.13	-0.4
2,804,823	+		GFF5776	0.13	-0.2
2,804,823	+		GFF5776	0.13	+0.4
2,804,823	+		GFF5776	0.13	+0.4
2,804,823	+		GFF5776	0.13	-0.3
2,804,824	-		GFF5776	0.14	+1.1
2,804,824	-		GFF5776	0.14	-0.7
2,804,824	-		GFF5776	0.14	+1.6
2,805,786	+				+0.0
2,805,786	+				-0.8
2,805,786	+				+0.1
2,805,786	+				-1.0
2,806,088	+		GFF5777	0.31	+0.2
2,806,247	+		GFF5777	0.47	-0.3
2,806,247	+		GFF5777	0.47	-0.3
2,806,247	+		GFF5777	0.47	+0.4
2,806,248	-		GFF5777	0.47	-0.2
2,806,248	-		GFF5777	0.47	+0.0
2,806,248	-		GFF5777	0.47	-0.7
2,806,248	-		GFF5777	0.47	-0.7
2,806,248	-		GFF5777	0.47	-0.1
2,806,248	-		GFF5777	0.47	-0.0
2,806,248	-		GFF5777	0.47	-0.0
2,806,334	+		GFF5777	0.56	-0.1
2,806,335	-		GFF5777	0.56	-0.6
2,806,712	+				+0.2
2,806,713	-				-0.3
2,806,713	-				+0.7
2,806,713	-				+0.6
2,807,204	+		GFF5778	0.31	-0.2
2,807,204	+		GFF5778	0.31	+0.5
2,807,204	+		GFF5778	0.31	+0.9
2,807,205	-		GFF5778	0.31	-0.2
2,807,205	-		GFF5778	0.31	+0.4
2,807,205	-		GFF5778	0.31	+0.2
2,807,447	+		GFF5778	0.52	+0.0
2,807,447	+		GFF5778	0.52	-0.7
2,807,448	-		GFF5778	0.52	-0.0
2,807,741	+		GFF5778	0.78	+0.1