Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5052

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
2,068,008	+				-0.8
2,068,008	+				-1.3
2,068,009	-				-0.0
2,068,016	+				-0.1
2,068,064	+				+0.9
2,068,079	+				-0.4
2,068,091	+				-0.6
2,068,091	+				+0.1
2,068,092	-				-0.1
2,068,101	+				+0.3
2,068,149	+				+0.3
2,068,150	-				-0.3
2,068,151	+				-0.3
2,068,151	+				-0.0
2,068,152	-				+0.2
2,068,152	-				-0.3
2,068,152	-				+1.2
2,068,152	-				-0.2
2,068,184	+				-0.2
2,068,185	-				+1.0
2,068,185	-				-0.8
2,068,244	-				+0.2
2,068,246	+				-0.1
2,068,271	+				+0.1
2,068,429	+		GFF5051	0.31	+0.1
2,068,531	-		GFF5051	0.51	-0.2
2,068,543	+		GFF5051	0.53	+0.2
2,068,543	+		GFF5051	0.53	+0.9
2,068,614	-		GFF5051	0.66	-0.2
2,068,615	+		GFF5051	0.67	-0.3
2,068,616	-		GFF5051	0.67	-0.4
2,069,019	+		GFF5052	0.37	+0.2
2,069,019	+		GFF5052	0.37	-1.1
2,069,020	-		GFF5052	0.37	+0.1
2,069,020	-		GFF5052	0.37	+0.2
2,069,020	-		GFF5052	0.37	-0.1
2,069,193	+		GFF5052	0.69	-0.0
2,069,193	+		GFF5052	0.69	+0.3
2,069,193	+		GFF5052	0.69	-0.1
2,069,194	-		GFF5052	0.70	-0.3
2,069,194	-		GFF5052	0.70	-0.2
2,069,194	-		GFF5052	0.70	-0.4
2,069,194	-		GFF5052	0.70	+0.2
2,069,194	-		GFF5052	0.70	-0.3
2,069,370	-				+0.4
2,069,372	-				-0.1
2,069,374	-				+0.3
2,069,387	+				+0.3
2,069,416	-				+0.6
2,069,472	+				-0.5
2,069,474	+				-1.2
2,069,493	+				-0.2
2,069,493	+				-0.1
2,069,493	+				-0.5
2,069,494	-				-0.1
2,069,494	-				-0.0
2,069,494	-				+0.8
2,069,494	-				-0.0
2,069,913	+		GFF5053	0.51	-0.2
2,070,040	+		GFF5053	0.72	+0.6
2,070,040	+		GFF5053	0.72	+0.0
2,070,041	-		GFF5053	0.72	-0.4
2,070,041	-		GFF5053	0.72	+0.3
2,070,229	+				+0.9
2,070,229	+				-0.4