Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4968

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
1,984,091	+		GFF4967	0.45	-0.3
1,984,154	+		GFF4967	0.49	-0.8
1,984,192	+		GFF4967	0.51	+0.7
1,984,385	+		GFF4967	0.62	+0.6
1,984,414	+		GFF4967	0.64	+0.1
1,984,415	-		GFF4967	0.64	+0.2
1,984,721	+		GFF4967	0.82	-1.2
1,984,745	+		GFF4967	0.83	+0.5
1,984,746	-		GFF4967	0.84	-0.1
1,984,746	-		GFF4967	0.84	+1.3
1,985,532	+		GFF4968	0.38	-0.1
1,985,533	-		GFF4968	0.38	+0.0
1,985,533	-		GFF4968	0.38	+0.3
1,985,538	+		GFF4968	0.38	-0.8
1,985,539	-		GFF4968	0.38	-0.3
1,985,539	-		GFF4968	0.38	+0.4
1,985,539	-		GFF4968	0.38	-0.4
1,985,539	-		GFF4968	0.38	+1.8
1,985,539	-		GFF4968	0.38	-0.1
1,985,553	+		GFF4968	0.39	+0.1
1,985,554	-		GFF4968	0.39	+0.5
1,985,554	-		GFF4968	0.39	-0.0
1,986,001	-		GFF4968	0.72	+0.0
1,986,001	-		GFF4968	0.72	-0.1
1,986,042	+		GFF4968	0.76	+0.9
1,986,042	+		GFF4968	0.76	+0.3
1,986,042	+		GFF4968	0.76	+0.1
1,986,043	-		GFF4968	0.76	-0.6
1,986,141	+		GFF4968	0.83	-0.0
1,986,141	+		GFF4968	0.83	+0.3
1,986,141	+		GFF4968	0.83	+0.6
1,986,187	-		GFF4968	0.86	-0.2
1,986,187	-		GFF4968	0.86	-1.0
1,986,187	-		GFF4968	0.86	+0.4
1,986,403	+				-0.3
1,986,449	+				-0.7
1,986,450	-				+0.1
1,986,461	-				+0.1
1,986,491	-				+0.3
1,986,594	+				-1.0
1,986,594	+				+0.3
1,986,595	-				-0.3
1,986,595	-				+1.0
1,986,806	-				+0.1
1,986,941	-		GFF4969	0.12	-0.2
1,986,941	-		GFF4969	0.12	-0.3
1,987,156	+		GFF4969	0.23	-0.5
1,987,157	-		GFF4969	0.23	+0.8