Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4963

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
1,980,324	+		GFF4962	0.61	-0.6
1,980,768	+		GFF4962	0.82	+0.3
1,980,783	+		GFF4962	0.82	-0.9
1,980,792	+		GFF4962	0.83	-0.6
1,980,792	+		GFF4962	0.83	-1.4
1,980,796	-		GFF4962	0.83	+0.3
1,980,850	-		GFF4962	0.85	-0.7
1,981,039	-				+1.0
1,981,247	-		GFF4963	0.36	+1.3
1,981,247	-		GFF4963	0.36	+0.1
1,981,247	-		GFF4963	0.36	-2.1
1,981,405	+		GFF4963	0.78	+0.4
1,981,406	-		GFF4963	0.78	-0.3
1,981,406	-		GFF4963	0.78	+0.4
1,981,406	-		GFF4963	0.78	+0.1
1,981,406	-		GFF4963	0.78	+0.3
1,981,515	-				+0.1
1,981,839	+		GFF4964	0.52	+1.3
1,982,071	+				+0.1
1,982,255	+		GFF4965	0.57	-0.2
1,982,255	+		GFF4965	0.57	+0.5
1,982,255	+		GFF4965	0.57	+0.3
1,982,255	+		GFF4965	0.57	-0.5
1,982,256	-		GFF4965	0.57	+0.5
1,982,256	-		GFF4965	0.57	-0.2
1,982,256	-		GFF4965	0.57	+0.0
1,982,291	+		GFF4965	0.74	+0.1
1,982,291	+		GFF4965	0.74	-0.1
1,982,292	-		GFF4965	0.74	-1.9
1,982,292	-		GFF4965	0.74	+0.1
1,982,292	-		GFF4965	0.74	+0.2