Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4952

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
1,969,936	+		GFF4951	0.35	-0.8
1,969,937	-		GFF4951	0.35	+1.3
1,970,195	-		GFF4951	0.55	+0.1
1,970,350	+		GFF4951	0.66	-0.7
1,970,350	+		GFF4951	0.66	-0.0
1,970,401	+		GFF4951	0.70	+0.2
1,970,402	-		GFF4951	0.70	-0.2
1,970,455	+		GFF4951	0.74	+0.0
1,970,456	-		GFF4951	0.74	-0.1
1,970,861	+				-0.1
1,970,861	+				-0.1
1,971,131	+		GFF4952	0.65	+0.6
1,971,132	-		GFF4952	0.65	+0.1
1,971,153	-		GFF4952	0.70	-0.2
1,971,162	-		GFF4952	0.72	+2.3
1,971,262	-				+0.4
1,971,275	+				-1.0
1,971,275	+				-0.2
1,971,275	+				+0.4
1,971,275	+				-0.0
1,971,276	-				-0.1
1,971,276	-				-2.4
1,971,276	-				+1.0
1,971,503	+		GFF4953	0.18	-0.2
1,971,503	+		GFF4953	0.18	+0.2
1,971,503	+		GFF4953	0.18	-1.5
1,971,503	+		GFF4953	0.18	+1.0
1,971,503	+		GFF4953	0.18	+0.3
1,971,503	+		GFF4953	0.18	-0.2
1,971,503	+		GFF4953	0.18	-0.1
1,971,503	+		GFF4953	0.18	-0.7
1,971,503	+		GFF4953	0.18	-0.0
1,971,503	+		GFF4953	0.18	-0.7
1,971,503	+		GFF4953	0.18	+0.4
1,971,504	-		GFF4953	0.18	+1.0
1,971,504	-		GFF4953	0.18	+0.1
1,971,504	-		GFF4953	0.18	+0.5
1,971,504	-		GFF4953	0.18	+0.4
1,971,504	-		GFF4953	0.18	-0.2
1,971,504	-		GFF4953	0.18	-0.4
1,971,504	-		GFF4953	0.18	-1.1
1,971,518	+		GFF4953	0.19	+0.3
1,971,519	-		GFF4953	0.19	-0.1
1,971,519	-		GFF4953	0.19	-0.3
1,971,581	+		GFF4953	0.25	+0.0
1,971,650	+		GFF4953	0.30	+0.5
1,971,650	+		GFF4953	0.30	+0.3
1,971,650	+		GFF4953	0.30	+0.1
1,971,650	+		GFF4953	0.30	-0.1
1,971,650	+		GFF4953	0.30	+0.4
1,971,650	+		GFF4953	0.30	+0.9
1,971,650	+		GFF4953	0.30	+0.3
1,971,650	+		GFF4953	0.30	+1.0
1,971,650	+		GFF4953	0.30	+0.6
1,971,651	-		GFF4953	0.30	-0.3
1,971,651	-		GFF4953	0.30	-0.3
1,971,651	-		GFF4953	0.30	+0.6
1,971,651	-		GFF4953	0.30	-0.9
1,971,651	-		GFF4953	0.30	-0.6
1,971,651	-		GFF4953	0.30	+0.7
1,971,651	-		GFF4953	0.30	-0.6
1,971,651	-		GFF4953	0.30	+0.5
1,971,651	-		GFF4953	0.30	+0.3
1,971,651	-		GFF4953	0.30	+0.4
1,972,007	+		GFF4953	0.60	+0.5
1,972,007	+		GFF4953	0.60	-0.4
1,972,008	-		GFF4953	0.60	+0.2