Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF488 and GFF489 are separated by 4 nucleotides GFF489 and GFF490 are separated by 15 nucleotides GFF490 and GFF491 overlap by 4 nucleotides
GFF488 - RND multidrug efflux transporter; Acriflavin resistance protein, at 156,108 to 159,239
GFF488
GFF489 - RND efflux system, outer membrane lipoprotein, NodT family, at 159,244 to 160,644
GFF489
GFF490 - Type III secretion cytoplasmic protein (YscL), at 160,660 to 161,274
GFF490
GFF491 - hypothetical protein, at 161,271 to 161,714
GFF491
Position (kb) 159
160
161 Strain fitness (log2 ratio) -2
-1
0
1 at 158.377 kb on - strand, within GFF488 at 158.377 kb on - strand, within GFF488 at 158.574 kb on + strand, within GFF488 at 158.575 kb on - strand, within GFF488 at 158.752 kb on - strand, within GFF488 at 158.772 kb on + strand, within GFF488 at 158.772 kb on + strand, within GFF488 at 159.325 kb on + strand at 159.626 kb on - strand, within GFF489 at 159.772 kb on + strand, within GFF489 at 159.772 kb on + strand, within GFF489 at 159.773 kb on - strand, within GFF489 at 159.832 kb on + strand, within GFF489 at 159.833 kb on - strand, within GFF489 at 159.866 kb on - strand, within GFF489 at 159.866 kb on - strand, within GFF489 at 159.866 kb on - strand, within GFF489 at 160.013 kb on - strand, within GFF489 at 160.013 kb on - strand, within GFF489 at 161.057 kb on + strand, within GFF490
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 158,377 - GFF488 0.72 +0.4 158,377 - GFF488 0.72 +0.7 158,574 + GFF488 0.79 -2.0 158,575 - GFF488 0.79 -0.2 158,752 - GFF488 0.84 +0.6 158,772 + GFF488 0.85 +0.2 158,772 + GFF488 0.85 +0.2 159,325 + +0.4 159,626 - GFF489 0.27 +0.2 159,772 + GFF489 0.38 +1.0 159,772 + GFF489 0.38 +1.2 159,773 - GFF489 0.38 +0.1 159,832 + GFF489 0.42 -0.2 159,833 - GFF489 0.42 -0.0 159,866 - GFF489 0.44 -0.9 159,866 - GFF489 0.44 -0.2 159,866 - GFF489 0.44 +0.2 160,013 - GFF489 0.55 +0.0 160,013 - GFF489 0.55 -0.6 161,057 + GFF490 0.65 +0.1
Or see this region's nucleotide sequence