Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF484 and GFF485 overlap by 4 nucleotides GFF485 and GFF486 are separated by 809 nucleotides
GFF484 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2), at 149,338 to 150,501
GFF484
GFF485 - putative protein PaaI, possibly involved in aromatic compounds catabolism, at 150,498 to 150,992
GFF485
GFF486 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 151,802 to 152,968
GFF486
Position (kb) 150
151 Strain fitness (log2 ratio) -1
0
1 at 149.795 kb on - strand, within GFF484 at 150.498 kb on - strand at 150.685 kb on - strand, within GFF485 at 150.871 kb on - strand, within GFF485 at 150.978 kb on + strand at 150.979 kb on - strand at 150.979 kb on - strand at 150.979 kb on - strand at 150.980 kb on + strand at 151.143 kb on + strand at 151.172 kb on + strand at 151.172 kb on + strand at 151.172 kb on + strand at 151.172 kb on + strand at 151.240 kb on + strand at 151.303 kb on + strand at 151.304 kb on - strand at 151.359 kb on + strand at 151.414 kb on + strand at 151.414 kb on + strand at 151.415 kb on - strand at 151.415 kb on - strand at 151.465 kb on - strand at 151.516 kb on + strand at 151.517 kb on - strand at 151.594 kb on - strand at 151.594 kb on - strand at 151.947 kb on + strand, within GFF486 at 151.947 kb on + strand, within GFF486 at 151.979 kb on + strand, within GFF486
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 149,795 - GFF484 0.39 -0.4 150,498 - +0.4 150,685 - GFF485 0.38 -0.1 150,871 - GFF485 0.75 -0.7 150,978 + +0.3 150,979 - -0.1 150,979 - +0.2 150,979 - +0.5 150,980 + +1.0 151,143 + +1.1 151,172 + +0.6 151,172 + -0.2 151,172 + +1.0 151,172 + -0.2 151,240 + -1.4 151,303 + +1.2 151,304 - +0.0 151,359 + +0.1 151,414 + -0.8 151,414 + +0.5 151,415 - +0.2 151,415 - +0.3 151,465 - -0.4 151,516 + -0.5 151,517 - -0.0 151,594 - -0.3 151,594 - -0.2 151,947 + GFF486 0.12 -0.1 151,947 + GFF486 0.12 -0.6 151,979 + GFF486 0.15 +0.2
Or see this region's nucleotide sequence