Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4840

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
1,849,039	+		GFF4839	0.55	+0.1
1,849,039	+		GFF4839	0.55	+0.1
1,849,039	+		GFF4839	0.55	+0.5
1,849,039	+		GFF4839	0.55	-0.8
1,849,040	-		GFF4839	0.55	+0.5
1,849,510	+		GFF4839	0.88	-0.1
1,849,511	-		GFF4839	0.88	-0.3
1,849,511	-		GFF4839	0.88	+0.0
1,849,511	-		GFF4839	0.88	-1.1
1,849,511	-		GFF4839	0.88	-0.3
1,849,511	-		GFF4839	0.88	+0.6
1,849,639	+				-0.0
1,849,698	+				+0.3
1,849,991	+		GFF4840	0.40	-0.5
1,850,238	+		GFF4840	0.76	+0.3
1,850,238	+		GFF4840	0.76	+0.6
1,850,238	+		GFF4840	0.76	+0.7
1,850,239	-		GFF4840	0.76	-0.1
1,850,239	-		GFF4840	0.76	+0.1
1,850,239	-		GFF4840	0.76	+0.4
1,850,337	+				-0.0
1,850,337	+				+0.0
1,850,338	-				+0.3
1,850,358	+				-1.0
1,850,517	-		GFF4841	0.37	+0.2
1,850,803	-				-0.3
1,851,250	+		GFF4842	0.46	+1.2