Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4730

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
1,680,922	+		GFF4729	0.33	+0.1
1,680,923	-		GFF4729	0.33	-0.6
1,680,923	-		GFF4729	0.33	-0.2
1,680,996	+		GFF4729	0.38	-0.1
1,680,996	+		GFF4729	0.38	+0.3
1,680,997	-		GFF4729	0.39	-0.1
1,680,997	-		GFF4729	0.39	-0.2
1,680,997	-		GFF4729	0.39	+0.6
1,681,132	+		GFF4729	0.48	+0.4
1,681,132	+		GFF4729	0.48	+0.1
1,681,132	+		GFF4729	0.48	-0.4
1,681,337	-		GFF4729	0.63	-0.3
1,681,411	+		GFF4729	0.68	-0.4
1,681,411	+		GFF4729	0.68	+0.1
1,681,411	+		GFF4729	0.68	-0.1
1,681,411	+		GFF4729	0.68	-0.1
1,681,528	+		GFF4729	0.77	+0.5
1,681,529	-		GFF4729	0.77	+0.3
1,681,646	-		GFF4729	0.85	+0.4
1,681,646	-		GFF4729	0.85	+0.4
1,681,831	+				+1.0
1,681,831	+				+0.5
1,681,832	-				-0.1
1,681,842	+				+0.1
1,681,842	+				+0.3
1,681,842	+				-0.6
1,681,843	-				+0.0
1,681,843	-				-0.7
1,681,913	+				-0.2
1,681,914	-				-0.1
1,681,914	-				-0.5
1,681,952	+				-0.8
1,681,956	+				+0.0
1,681,997	+				-1.4
1,681,998	-				+0.8
1,681,998	-				+0.2
1,682,008	+				-0.3
1,682,008	+				-0.5
1,682,009	-				-0.7
1,682,009	-				+0.7
1,682,009	-				-0.8
1,682,202	+		GFF4730	0.17	+0.2
1,682,202	+		GFF4730	0.17	-0.2
1,682,202	+		GFF4730	0.17	-1.8
1,682,203	-		GFF4730	0.17	-0.2
1,682,353	+		GFF4730	0.25	+0.4
1,682,353	+		GFF4730	0.25	-0.4
1,682,353	+		GFF4730	0.25	+0.6
1,682,353	+		GFF4730	0.25	-0.1
1,682,353	+		GFF4730	0.25	+0.2
1,682,353	+		GFF4730	0.25	-0.4
1,682,354	-		GFF4730	0.25	+0.5
1,682,354	-		GFF4730	0.25	-0.8
1,682,354	-		GFF4730	0.25	-1.4
1,682,505	+		GFF4730	0.32	+0.2
1,682,505	+		GFF4730	0.32	+0.2
1,682,505	+		GFF4730	0.32	+0.2
1,682,506	-		GFF4730	0.32	+1.2
1,682,563	-		GFF4730	0.35	+0.8
1,682,580	+		GFF4730	0.36	-0.2
1,683,033	+		GFF4730	0.58	+0.1
1,683,033	+		GFF4730	0.58	+0.1
1,683,034	-		GFF4730	0.58	-0.4
1,683,048	+		GFF4730	0.59	-0.4
1,683,048	+		GFF4730	0.59	+0.1
1,683,049	-		GFF4730	0.59	+0.5
1,683,049	-		GFF4730	0.59	+0.2
1,683,066	+		GFF4730	0.59	-0.9
1,683,066	+		GFF4730	0.59	-0.3
1,683,066	+		GFF4730	0.59	+0.1
1,683,067	-		GFF4730	0.59	-0.2
1,683,067	-		GFF4730	0.59	-0.2
1,683,067	-		GFF4730	0.59	+0.2
1,683,067	-		GFF4730	0.59	-0.2
1,683,067	-		GFF4730	0.59	+0.6
1,683,067	-		GFF4730	0.59	-0.4
1,683,165	+		GFF4730	0.64	-0.3
1,683,166	-		GFF4730	0.64	-0.4
1,683,222	+		GFF4730	0.67	+0.9
1,683,223	-		GFF4730	0.67	+0.1
1,683,223	-		GFF4730	0.67	-0.0
1,683,253	-		GFF4730	0.69	+0.0
1,683,372	+		GFF4730	0.74	+0.3
1,683,372	+		GFF4730	0.74	-0.4
1,683,373	-		GFF4730	0.74	+0.0
1,683,432	+		GFF4730	0.77	+0.2
1,683,432	+		GFF4730	0.77	-0.7
1,683,432	+		GFF4730	0.77	-0.4
1,683,432	+		GFF4730	0.77	-0.5
1,683,433	-		GFF4730	0.77	-1.6
1,683,918	+				-0.1
1,683,918	+				-2.0
1,683,954	+				-0.2
1,683,954	+				-1.4
1,683,954	+				-1.2
1,683,954	+				-0.4
1,683,954	+				-0.5
1,683,954	+				-0.2
1,683,954	+				-0.9
1,683,954	+				-0.4
1,683,955	-				-0.6
1,683,955	-				-0.5
1,683,955	-				-1.4
1,683,955	-				-0.9
1,684,155	+		GFF4731	0.19	+0.3
1,684,155	+		GFF4731	0.19	+0.1
1,684,155	+		GFF4731	0.19	-0.4
1,684,156	-		GFF4731	0.19	-0.7
1,684,438	-		GFF4731	0.41	-0.5
1,684,452	+		GFF4731	0.42	-1.0
1,684,453	-		GFF4731	0.42	-0.8
1,684,453	-		GFF4731	0.42	-0.7
1,684,464	+		GFF4731	0.43	-0.2
1,684,590	+		GFF4731	0.52	-0.9
1,684,590	+		GFF4731	0.52	-0.9
1,684,591	-		GFF4731	0.52	-1.1
1,684,591	-		GFF4731	0.52	-0.6
1,684,591	-		GFF4731	0.52	-0.2
1,684,591	-		GFF4731	0.52	-0.9
1,684,591	-		GFF4731	0.52	-0.2
1,684,591	-		GFF4731	0.52	-0.2
1,684,659	+		GFF4731	0.57	-0.1
1,684,659	+		GFF4731	0.57	-1.6
1,684,659	+		GFF4731	0.57	-0.3
1,684,659	+		GFF4731	0.57	-1.9
1,684,659	+		GFF4731	0.57	-0.2
1,684,660	-		GFF4731	0.58	-0.4
1,684,660	-		GFF4731	0.58	-0.1
1,684,782	+		GFF4731	0.67	-1.8
1,684,782	+		GFF4731	0.67	-0.9
1,684,783	-		GFF4731	0.67	+0.6
1,684,783	-		GFF4731	0.67	-1.6
1,684,885	-		GFF4731	0.75	-0.8
1,684,885	-		GFF4731	0.75	-0.4
1,684,885	-		GFF4731	0.75	-0.6