Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4373

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4372 and GFF4373 are separated by 9 nucleotidesGFF4373 and GFF4374 overlap by 4 nucleotidesGFF4374 and GFF4375 are separated by 5 nucleotides GFF4372 - Various polyols ABC transporter, periplasmic substrate-binding protein, at 1,302,179 to 1,303,528 GFF4372 GFF4373 - Maltose/maltodextrin ABC transporter, permease protein MalF, at 1,303,538 to 1,304,425 GFF4373 GFF4374 - Maltose/maltodextrin ABC transporter, permease protein MalG, at 1,304,422 to 1,305,261 GFF4374 GFF4375 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,305,267 to 1,306,040 GFF4375 Position (kb) 1303 1304 1305Strain fitness (log2 ratio) -1 0 1 2at 1302.639 kb on - strand, within GFF4372at 1302.651 kb on - strand, within GFF4372at 1302.668 kb on + strand, within GFF4372at 1302.668 kb on + strand, within GFF4372at 1302.668 kb on + strand, within GFF4372at 1302.668 kb on + strand, within GFF4372at 1302.709 kb on - strand, within GFF4372at 1302.943 kb on + strand, within GFF4372at 1302.943 kb on + strand, within GFF4372at 1302.943 kb on + strand, within GFF4372at 1303.089 kb on - strand, within GFF4372at 1303.103 kb on - strand, within GFF4372at 1303.181 kb on + strand, within GFF4372at 1303.214 kb on + strand, within GFF4372at 1303.214 kb on + strand, within GFF4372at 1303.215 kb on - strand, within GFF4372at 1303.215 kb on - strand, within GFF4372at 1303.271 kb on + strand, within GFF4372at 1303.272 kb on - strand, within GFF4372at 1303.302 kb on + strand, within GFF4372at 1303.464 kb on + strandat 1303.526 kb on + strandat 1303.706 kb on + strand, within GFF4373at 1303.867 kb on - strand, within GFF4373at 1303.875 kb on - strand, within GFF4373at 1303.875 kb on - strand, within GFF4373at 1303.886 kb on - strand, within GFF4373at 1304.100 kb on - strand, within GFF4373at 1304.178 kb on + strand, within GFF4373at 1304.292 kb on - strand, within GFF4373at 1304.381 kb on + strandat 1304.381 kb on + strandat 1304.390 kb on + strandat 1304.391 kb on - strandat 1304.506 kb on + strand, within GFF4374at 1304.506 kb on + strand, within GFF4374at 1304.507 kb on - strand, within GFF4374at 1304.520 kb on - strand, within GFF4374at 1304.707 kb on + strand, within GFF4374at 1304.707 kb on + strand, within GFF4374at 1304.765 kb on - strand, within GFF4374at 1304.771 kb on - strand, within GFF4374at 1304.771 kb on - strand, within GFF4374at 1305.058 kb on + strand, within GFF4374at 1305.058 kb on + strand, within GFF4374at 1305.059 kb on - strand, within GFF4374at 1305.059 kb on - strand, within GFF4374at 1305.059 kb on - strand, within GFF4374at 1305.180 kb on - strandat 1305.220 kb on + strandat 1305.221 kb on - strandat 1305.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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1,302,639 - GFF4372 0.34 +0.4
1,302,651 - GFF4372 0.35 -1.5
1,302,668 + GFF4372 0.36 +0.6
1,302,668 + GFF4372 0.36 -0.1
1,302,668 + GFF4372 0.36 +1.0
1,302,668 + GFF4372 0.36 +0.6
1,302,709 - GFF4372 0.39 +0.0
1,302,943 + GFF4372 0.57 +0.6
1,302,943 + GFF4372 0.57 -0.2
1,302,943 + GFF4372 0.57 -0.3
1,303,089 - GFF4372 0.67 -0.8
1,303,103 - GFF4372 0.68 +0.3
1,303,181 + GFF4372 0.74 +0.2
1,303,214 + GFF4372 0.77 -0.4
1,303,214 + GFF4372 0.77 +0.4
1,303,215 - GFF4372 0.77 +0.1
1,303,215 - GFF4372 0.77 -0.2
1,303,271 + GFF4372 0.81 -0.2
1,303,272 - GFF4372 0.81 +0.2
1,303,302 + GFF4372 0.83 -1.1
1,303,464 + -0.3
1,303,526 + -0.2
1,303,706 + GFF4373 0.19 -0.4
1,303,867 - GFF4373 0.37 -0.7
1,303,875 - GFF4373 0.38 +0.1
1,303,875 - GFF4373 0.38 -0.3
1,303,886 - GFF4373 0.39 -0.2
1,304,100 - GFF4373 0.63 -0.3
1,304,178 + GFF4373 0.72 -0.6
1,304,292 - GFF4373 0.85 -0.8
1,304,381 + +0.3
1,304,381 + +1.1
1,304,390 + +0.2
1,304,391 - -0.1
1,304,506 + GFF4374 0.10 +0.8
1,304,506 + GFF4374 0.10 +0.4
1,304,507 - GFF4374 0.10 -0.1
1,304,520 - GFF4374 0.12 -0.3
1,304,707 + GFF4374 0.34 +0.0
1,304,707 + GFF4374 0.34 -0.1
1,304,765 - GFF4374 0.41 +0.4
1,304,771 - GFF4374 0.42 +0.8
1,304,771 - GFF4374 0.42 +0.0
1,305,058 + GFF4374 0.76 -0.3
1,305,058 + GFF4374 0.76 +1.8
1,305,059 - GFF4374 0.76 +0.6
1,305,059 - GFF4374 0.76 +1.2
1,305,059 - GFF4374 0.76 +0.4
1,305,180 - +0.8
1,305,220 + -0.5
1,305,221 - -0.3
1,305,221 - +0.2

Or see this region's nucleotide sequence