Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4058 and GFF4059 overlap by 4 nucleotides GFF4059 and GFF4060 are separated by 89 nucleotides GFF4060 and GFF4061 are separated by 43 nucleotides GFF4061 and GFF4062 overlap by 8 nucleotides GFF4062 and GFF4063 overlap by 4 nucleotides
GFF4058 - Flagellum-specific ATP synthase FliI, at 976,328 to 977,635
GFF4058
GFF4059 - hypothetical protein, at 977,632 to 978,066
GFF4059
GFF4060 - Flagellar hook-associated protein FliD, at 978,156 to 979,514
GFF4060
GFF4061 - Flagellar biosynthesis protein FliS, at 979,558 to 979,944
GFF4061
GFF4062 - hypothetical protein, at 979,937 to 980,248
GFF4062
GFF4063 - Flagellar hook-length control protein FliK, at 980,245 to 981,282
GFF4063
Position (kb) 978
979
980 Strain fitness (log2 ratio) -2
-1
0
1 at 977.246 kb on + strand, within GFF4058 at 977.246 kb on + strand, within GFF4058 at 977.247 kb on - strand, within GFF4058 at 977.247 kb on - strand, within GFF4058 at 977.462 kb on + strand, within GFF4058 at 977.498 kb on + strand, within GFF4058 at 977.498 kb on + strand, within GFF4058 at 977.499 kb on - strand, within GFF4058 at 977.499 kb on - strand, within GFF4058 at 977.561 kb on + strand at 978.202 kb on - strand at 978.202 kb on - strand at 978.202 kb on - strand at 978.202 kb on - strand at 978.202 kb on - strand at 978.202 kb on - strand at 978.268 kb on - strand at 978.414 kb on + strand, within GFF4060 at 978.414 kb on + strand, within GFF4060 at 978.414 kb on + strand, within GFF4060 at 978.414 kb on + strand, within GFF4060 at 978.414 kb on + strand, within GFF4060 at 978.414 kb on + strand, within GFF4060 at 978.415 kb on - strand, within GFF4060 at 978.415 kb on - strand, within GFF4060 at 979.293 kb on + strand, within GFF4060 at 979.294 kb on - strand, within GFF4060 at 979.294 kb on - strand, within GFF4060 at 979.294 kb on - strand, within GFF4060 at 979.416 kb on + strand at 979.417 kb on - strand at 979.425 kb on + strand at 979.426 kb on - strand at 979.564 kb on + strand at 979.564 kb on + strand at 979.564 kb on + strand at 979.565 kb on - strand at 979.565 kb on - strand at 979.582 kb on + strand at 979.816 kb on + strand, within GFF4061 at 979.817 kb on - strand, within GFF4061 at 979.823 kb on - strand, within GFF4061 at 980.096 kb on + strand, within GFF4062 at 980.210 kb on + strand, within GFF4062
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 977,246 + GFF4058 0.70 +0.2 977,246 + GFF4058 0.70 -0.4 977,247 - GFF4058 0.70 +0.5 977,247 - GFF4058 0.70 +1.0 977,462 + GFF4058 0.87 -0.7 977,498 + GFF4058 0.89 +0.1 977,498 + GFF4058 0.89 +0.1 977,499 - GFF4058 0.90 -0.2 977,499 - GFF4058 0.90 +0.3 977,561 + +0.7 978,202 - -0.6 978,202 - -0.5 978,202 - +0.9 978,202 - +0.9 978,202 - +0.7 978,202 - +0.2 978,268 - -0.3 978,414 + GFF4060 0.19 -0.2 978,414 + GFF4060 0.19 +0.9 978,414 + GFF4060 0.19 +0.5 978,414 + GFF4060 0.19 +0.0 978,414 + GFF4060 0.19 +0.2 978,414 + GFF4060 0.19 -0.1 978,415 - GFF4060 0.19 +0.1 978,415 - GFF4060 0.19 +0.4 979,293 + GFF4060 0.84 +0.1 979,294 - GFF4060 0.84 +0.5 979,294 - GFF4060 0.84 +1.2 979,294 - GFF4060 0.84 -0.3 979,416 + +0.9 979,417 - +0.4 979,425 + -0.4 979,426 - +0.1 979,564 + +0.5 979,564 + -0.1 979,564 + -0.2 979,565 - +0.8 979,565 - -0.0 979,582 + +0.1 979,816 + GFF4061 0.67 -0.0 979,817 - GFF4061 0.67 -0.1 979,823 - GFF4061 0.68 -0.2 980,096 + GFF4062 0.51 -2.4 980,210 + GFF4062 0.88 +0.1
Or see this region's nucleotide sequence