Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3968

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3966 and GFF3967 are separated by 110 nucleotidesGFF3967 and GFF3968 are separated by 12 nucleotidesGFF3968 and GFF3969 overlap by 4 nucleotides GFF3966 - Transcriptional regulator, LuxR family precursor, at 881,689 to 882,384 GFF3966 GFF3967 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 882,495 to 883,049 GFF3967 GFF3968 - hypothetical protein, at 883,062 to 884,996 GFF3968 GFF3969 - Conserved domain protein, at 884,993 to 886,045 GFF3969 Position (kb) 883 884 885Strain fitness (log2 ratio) -2 -1 0 1at 882.370 kb on + strandat 882.371 kb on - strandat 882.531 kb on + strandat 882.531 kb on + strandat 882.531 kb on + strandat 882.532 kb on - strandat 882.604 kb on - strand, within GFF3967at 882.604 kb on - strand, within GFF3967at 882.604 kb on - strand, within GFF3967at 882.619 kb on - strand, within GFF3967at 882.619 kb on - strand, within GFF3967at 882.720 kb on + strand, within GFF3967at 882.721 kb on - strand, within GFF3967at 882.721 kb on - strand, within GFF3967at 882.721 kb on - strand, within GFF3967at 882.825 kb on + strand, within GFF3967at 882.826 kb on - strand, within GFF3967at 882.991 kb on - strand, within GFF3967at 883.268 kb on - strand, within GFF3968at 883.268 kb on - strand, within GFF3968at 883.268 kb on - strand, within GFF3968at 883.268 kb on - strand, within GFF3968at 883.427 kb on - strand, within GFF3968at 883.445 kb on - strand, within GFF3968at 883.498 kb on + strand, within GFF3968at 883.498 kb on + strand, within GFF3968at 883.499 kb on - strand, within GFF3968at 883.654 kb on + strand, within GFF3968at 883.654 kb on + strand, within GFF3968at 883.654 kb on + strand, within GFF3968at 883.655 kb on - strand, within GFF3968at 883.655 kb on - strand, within GFF3968at 883.655 kb on - strand, within GFF3968at 883.801 kb on + strand, within GFF3968at 883.802 kb on - strand, within GFF3968at 883.802 kb on - strand, within GFF3968at 883.894 kb on + strand, within GFF3968at 884.059 kb on + strand, within GFF3968at 884.059 kb on + strand, within GFF3968at 884.059 kb on + strand, within GFF3968at 884.059 kb on + strand, within GFF3968at 884.060 kb on - strand, within GFF3968at 884.060 kb on - strand, within GFF3968at 884.060 kb on - strand, within GFF3968at 884.060 kb on - strand, within GFF3968at 884.060 kb on - strand, within GFF3968at 884.060 kb on - strand, within GFF3968at 884.060 kb on - strand, within GFF3968at 884.060 kb on - strand, within GFF3968at 884.060 kb on - strand, within GFF3968at 884.060 kb on - strand, within GFF3968at 884.266 kb on + strand, within GFF3968at 884.267 kb on - strand, within GFF3968at 884.267 kb on - strand, within GFF3968at 884.302 kb on + strand, within GFF3968at 884.302 kb on + strand, within GFF3968at 884.743 kb on + strand, within GFF3968at 884.744 kb on - strand, within GFF3968at 884.869 kb on + strandat 884.869 kb on + strandat 884.870 kb on - strandat 884.870 kb on - strandat 884.905 kb on + strandat 884.906 kb on - strandat 885.078 kb on + strandat 885.261 kb on + strand, within GFF3969at 885.261 kb on + strand, within GFF3969at 885.262 kb on - strand, within GFF3969at 885.262 kb on - strand, within GFF3969at 885.383 kb on + strand, within GFF3969at 885.385 kb on + strand, within GFF3969at 885.385 kb on + strand, within GFF3969at 885.385 kb on + strand, within GFF3969at 885.386 kb on - strand, within GFF3969at 885.386 kb on - strand, within GFF3969at 885.386 kb on - strand, within GFF3969at 885.676 kb on - strand, within GFF3969at 885.676 kb on - strand, within GFF3969

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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882,370 + +0.5
882,371 - -0.1
882,531 + +1.6
882,531 + -0.2
882,531 + -0.8
882,532 - -0.2
882,604 - GFF3967 0.20 -0.8
882,604 - GFF3967 0.20 -0.0
882,604 - GFF3967 0.20 +0.3
882,619 - GFF3967 0.22 +0.7
882,619 - GFF3967 0.22 +0.5
882,720 + GFF3967 0.41 +0.2
882,721 - GFF3967 0.41 -0.1
882,721 - GFF3967 0.41 +0.3
882,721 - GFF3967 0.41 +0.4
882,825 + GFF3967 0.59 -0.4
882,826 - GFF3967 0.60 -0.1
882,991 - GFF3967 0.89 +0.7
883,268 - GFF3968 0.11 -0.0
883,268 - GFF3968 0.11 +0.2
883,268 - GFF3968 0.11 +0.5
883,268 - GFF3968 0.11 -0.2
883,427 - GFF3968 0.19 +0.4
883,445 - GFF3968 0.20 -0.6
883,498 + GFF3968 0.23 -0.1
883,498 + GFF3968 0.23 +0.2
883,499 - GFF3968 0.23 -0.8
883,654 + GFF3968 0.31 -0.1
883,654 + GFF3968 0.31 -0.6
883,654 + GFF3968 0.31 -0.4
883,655 - GFF3968 0.31 +0.1
883,655 - GFF3968 0.31 -0.2
883,655 - GFF3968 0.31 -0.4
883,801 + GFF3968 0.38 -0.1
883,802 - GFF3968 0.38 +0.4
883,802 - GFF3968 0.38 -0.1
883,894 + GFF3968 0.43 +0.2
884,059 + GFF3968 0.52 -1.8
884,059 + GFF3968 0.52 +0.1
884,059 + GFF3968 0.52 -0.1
884,059 + GFF3968 0.52 -0.3
884,060 - GFF3968 0.52 +0.1
884,060 - GFF3968 0.52 -0.0
884,060 - GFF3968 0.52 -0.0
884,060 - GFF3968 0.52 -0.1
884,060 - GFF3968 0.52 +0.4
884,060 - GFF3968 0.52 -0.9
884,060 - GFF3968 0.52 -0.2
884,060 - GFF3968 0.52 +0.9
884,060 - GFF3968 0.52 -0.2
884,060 - GFF3968 0.52 -0.3
884,266 + GFF3968 0.62 +0.0
884,267 - GFF3968 0.62 +0.4
884,267 - GFF3968 0.62 +1.4
884,302 + GFF3968 0.64 -0.8
884,302 + GFF3968 0.64 -0.5
884,743 + GFF3968 0.87 -2.7
884,744 - GFF3968 0.87 +0.4
884,869 + -0.2
884,869 + -0.2
884,870 - -0.2
884,870 - -0.6
884,905 + -1.0
884,906 - -2.1
885,078 + +0.3
885,261 + GFF3969 0.25 -1.0
885,261 + GFF3969 0.25 +0.5
885,262 - GFF3969 0.26 -0.4
885,262 - GFF3969 0.26 +0.1
885,383 + GFF3969 0.37 +1.0
885,385 + GFF3969 0.37 +0.7
885,385 + GFF3969 0.37 +0.7
885,385 + GFF3969 0.37 +0.9
885,386 - GFF3969 0.37 -0.2
885,386 - GFF3969 0.37 -0.1
885,386 - GFF3969 0.37 -0.5
885,676 - GFF3969 0.65 -0.6
885,676 - GFF3969 0.65 +0.4

Or see this region's nucleotide sequence