Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3804 and GFF3805 are separated by 4 nucleotides GFF3805 and GFF3806 are separated by 89 nucleotides GFF3806 and GFF3807 overlap by 4 nucleotides GFF3807 and GFF3808 are separated by 220 nucleotides
GFF3804 - Chromosome segregation ATPases-like protein, at 703,060 to 703,734
GFF3804
GFF3805 - Mll7338 protein, at 703,739 to 704,563
GFF3805
GFF3806 - S-adenosylmethionine:2-demethylmenaquinone methyltransferase (EC 2.1.-.-), at 704,653 to 705,618
GFF3806
GFF3807 - hypothetical protein, at 705,615 to 706,193
GFF3807
GFF3808 - Glycosyltransferase, at 706,414 to 711,405
GFF3808
Position (kb) 704
705
706 Strain fitness (log2 ratio) -1
0
1 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.869 kb on + strand, within GFF3805 at 703.870 kb on - strand, within GFF3805 at 703.870 kb on - strand, within GFF3805 at 703.894 kb on - strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.950 kb on + strand, within GFF3805 at 704.334 kb on + strand, within GFF3805 at 704.334 kb on + strand, within GFF3805 at 704.334 kb on + strand, within GFF3805 at 704.335 kb on - strand, within GFF3805 at 704.340 kb on + strand, within GFF3805 at 704.340 kb on + strand, within GFF3805 at 704.341 kb on - strand, within GFF3805 at 704.355 kb on + strand, within GFF3805 at 704.356 kb on - strand, within GFF3805 at 704.362 kb on - strand, within GFF3805 at 704.541 kb on + strand at 704.541 kb on + strand at 704.541 kb on + strand at 704.542 kb on - strand at 704.542 kb on - strand at 704.544 kb on + strand at 704.544 kb on + strand at 704.545 kb on - strand at 704.621 kb on + strand at 704.622 kb on - strand at 704.896 kb on + strand, within GFF3806 at 705.016 kb on + strand, within GFF3806 at 705.176 kb on - strand, within GFF3806 at 705.187 kb on + strand, within GFF3806 at 705.187 kb on + strand, within GFF3806 at 705.188 kb on - strand, within GFF3806 at 705.188 kb on - strand, within GFF3806 at 705.188 kb on - strand, within GFF3806 at 705.436 kb on + strand, within GFF3806 at 705.436 kb on + strand, within GFF3806 at 705.437 kb on - strand, within GFF3806 at 705.437 kb on - strand, within GFF3806 at 705.437 kb on - strand, within GFF3806 at 706.192 kb on - strand at 706.469 kb on + strand at 706.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 703,833 + GFF3805 0.11 -0.0 703,833 + GFF3805 0.11 -0.2 703,833 + GFF3805 0.11 +0.6 703,833 + GFF3805 0.11 -0.3 703,833 + GFF3805 0.11 +0.1 703,833 + GFF3805 0.11 +1.2 703,833 + GFF3805 0.11 +0.1 703,833 + GFF3805 0.11 -0.3 703,833 + GFF3805 0.11 -0.0 703,834 - GFF3805 0.12 -1.1 703,834 - GFF3805 0.12 -0.4 703,834 - GFF3805 0.12 +0.1 703,834 - GFF3805 0.12 +0.5 703,834 - GFF3805 0.12 +0.3 703,834 - GFF3805 0.12 -0.5 703,834 - GFF3805 0.12 +0.6 703,834 - GFF3805 0.12 +0.3 703,834 - GFF3805 0.12 +0.1 703,869 + GFF3805 0.16 +0.1 703,870 - GFF3805 0.16 +0.3 703,870 - GFF3805 0.16 -0.2 703,894 - GFF3805 0.19 +0.2 703,920 + GFF3805 0.22 +0.3 703,920 + GFF3805 0.22 +0.4 703,920 + GFF3805 0.22 +0.1 703,921 - GFF3805 0.22 +0.0 703,921 - GFF3805 0.22 +0.6 703,921 - GFF3805 0.22 +0.6 703,950 + GFF3805 0.26 +0.6 704,334 + GFF3805 0.72 +0.2 704,334 + GFF3805 0.72 -0.2 704,334 + GFF3805 0.72 +0.1 704,335 - GFF3805 0.72 +0.2 704,340 + GFF3805 0.73 -0.2 704,340 + GFF3805 0.73 +0.5 704,341 - GFF3805 0.73 +0.2 704,355 + GFF3805 0.75 -0.6 704,356 - GFF3805 0.75 -0.3 704,362 - GFF3805 0.76 -0.1 704,541 + -0.0 704,541 + +0.0 704,541 + -0.5 704,542 - +0.3 704,542 - +0.6 704,544 + +0.2 704,544 + -0.0 704,545 - -0.2 704,621 + -0.3 704,622 - -1.4 704,896 + GFF3806 0.25 +1.0 705,016 + GFF3806 0.38 +0.0 705,176 - GFF3806 0.54 +0.3 705,187 + GFF3806 0.55 -0.0 705,187 + GFF3806 0.55 +1.1 705,188 - GFF3806 0.55 +0.2 705,188 - GFF3806 0.55 +0.3 705,188 - GFF3806 0.55 +1.1 705,436 + GFF3806 0.81 +0.6 705,436 + GFF3806 0.81 -0.3 705,437 - GFF3806 0.81 +0.1 705,437 - GFF3806 0.81 +0.1 705,437 - GFF3806 0.81 +0.3 706,192 - +1.5 706,469 + +0.4 706,470 - -0.5
Or see this region's nucleotide sequence