Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3753

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
647,080	+		GFF3752	0.46	+0.3
647,081	-		GFF3752	0.46	-0.8
647,081	-		GFF3752	0.46	+0.0
647,645	+				+1.2
647,645	+				-0.0
647,714	+				-0.2
647,721	+				-0.1
647,721	+				-0.5
647,722	-				+0.4
647,722	-				-0.4
647,722	-				+0.3
647,725	-				+0.5
647,725	-				+1.1
647,772	-				+0.6
648,066	+				+0.4
648,067	-				+0.3
648,067	-				-0.2
648,108	+				+0.5
648,147	+		GFF3754	0.14	-0.7
648,148	-		GFF3754	0.14	-0.4
648,180	+		GFF3754	0.21	-0.6
648,181	-		GFF3754	0.21	-0.2
648,181	-		GFF3754	0.21	-0.1
648,511	-		GFF3754	0.90	-0.1
648,605	+				+0.5
648,636	+				-0.3