Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3590 and GFF3591 are separated by 127 nucleotides GFF3591 and GFF3592 are separated by 12 nucleotides GFF3592 and GFF3593 overlap by 4 nucleotides
GFF3590 - Urocanate hydratase (EC 4.2.1.49), at 477,422 to 479,119
GFF3590
GFF3591 - Histidine utilization repressor, at 479,247 to 479,963
GFF3591
GFF3592 - Transcriptional regulator protein, at 479,976 to 480,776
GFF3592
GFF3593 - Autolysin sensor kinase (EC 2.7.3.-), at 480,773 to 481,855
GFF3593
Position (kb) 479
480
481 Strain fitness (log2 ratio) -2
-1
0
1 at 479.019 kb on + strand at 479.154 kb on + strand at 479.154 kb on + strand at 479.159 kb on - strand at 479.174 kb on - strand at 479.195 kb on + strand at 479.195 kb on + strand at 479.237 kb on + strand at 479.246 kb on + strand at 479.246 kb on + strand at 479.246 kb on + strand at 479.247 kb on - strand at 479.247 kb on - strand at 479.283 kb on + strand at 479.466 kb on + strand, within GFF3591 at 479.466 kb on + strand, within GFF3591 at 479.466 kb on + strand, within GFF3591 at 479.466 kb on + strand, within GFF3591 at 479.466 kb on + strand, within GFF3591 at 479.466 kb on + strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.467 kb on - strand, within GFF3591 at 479.484 kb on + strand, within GFF3591 at 479.485 kb on - strand, within GFF3591 at 479.718 kb on + strand, within GFF3591 at 479.719 kb on - strand, within GFF3591 at 479.719 kb on - strand, within GFF3591 at 479.719 kb on - strand, within GFF3591 at 479.758 kb on - strand, within GFF3591 at 480.001 kb on + strand at 480.002 kb on - strand at 480.211 kb on + strand, within GFF3592 at 480.211 kb on + strand, within GFF3592 at 480.211 kb on + strand, within GFF3592 at 480.212 kb on - strand, within GFF3592 at 480.212 kb on - strand, within GFF3592 at 480.212 kb on - strand, within GFF3592 at 480.212 kb on - strand, within GFF3592 at 480.212 kb on - strand, within GFF3592 at 480.463 kb on + strand, within GFF3592 at 480.464 kb on - strand, within GFF3592 at 480.464 kb on - strand, within GFF3592 at 480.500 kb on - strand, within GFF3592 at 481.113 kb on + strand, within GFF3593 at 481.156 kb on - strand, within GFF3593 at 481.440 kb on + strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.443 kb on + strand, within GFF3593 at 481.444 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.580 kb on + strand, within GFF3593 at 481.756 kb on + strand at 481.756 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 479,019 + +0.2 479,154 + +0.3 479,154 + +0.4 479,159 - +0.2 479,174 - +0.0 479,195 + +0.3 479,195 + -1.5 479,237 + +0.3 479,246 + +0.5 479,246 + -0.2 479,246 + +0.3 479,247 - -0.5 479,247 - -1.5 479,283 + -0.6 479,466 + GFF3591 0.31 -0.2 479,466 + GFF3591 0.31 +0.4 479,466 + GFF3591 0.31 -0.5 479,466 + GFF3591 0.31 -0.7 479,466 + GFF3591 0.31 +0.8 479,466 + GFF3591 0.31 +0.4 479,467 - GFF3591 0.31 -0.3 479,467 - GFF3591 0.31 -0.3 479,467 - GFF3591 0.31 -0.0 479,467 - GFF3591 0.31 -1.8 479,467 - GFF3591 0.31 -0.7 479,467 - GFF3591 0.31 -0.2 479,467 - GFF3591 0.31 +0.1 479,484 + GFF3591 0.33 -0.6 479,485 - GFF3591 0.33 -0.8 479,718 + GFF3591 0.66 -0.3 479,719 - GFF3591 0.66 +0.2 479,719 - GFF3591 0.66 +0.4 479,719 - GFF3591 0.66 -1.5 479,758 - GFF3591 0.71 -0.3 480,001 + -0.4 480,002 - -1.1 480,211 + GFF3592 0.29 +0.3 480,211 + GFF3592 0.29 +0.2 480,211 + GFF3592 0.29 +0.7 480,212 - GFF3592 0.29 -0.0 480,212 - GFF3592 0.29 -0.3 480,212 - GFF3592 0.29 -0.4 480,212 - GFF3592 0.29 +0.9 480,212 - GFF3592 0.29 -0.2 480,463 + GFF3592 0.61 -0.0 480,464 - GFF3592 0.61 -0.7 480,464 - GFF3592 0.61 -0.0 480,500 - GFF3592 0.65 +0.3 481,113 + GFF3593 0.31 +1.1 481,156 - GFF3593 0.35 -0.1 481,440 + GFF3593 0.62 -0.4 481,441 - GFF3593 0.62 +0.7 481,441 - GFF3593 0.62 -0.1 481,441 - GFF3593 0.62 +0.1 481,443 + GFF3593 0.62 +0.3 481,444 - GFF3593 0.62 +0.9 481,570 - GFF3593 0.74 -0.6 481,570 - GFF3593 0.74 -0.3 481,570 - GFF3593 0.74 -0.2 481,580 + GFF3593 0.75 -0.0 481,756 + +0.4 481,756 + +1.1
Or see this region's nucleotide sequence