Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3289 and GFF3290 overlap by 4 nucleotides GFF3290 and GFF3291 are separated by 88 nucleotides GFF3291 and GFF3292 are separated by 95 nucleotides
GFF3289 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 174,222 to 175,139
GFF3289
GFF3290 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 175,136 to 176,011
GFF3290
GFF3291 - Putative branched-chain amino acid transporter substrate-binding protein, at 176,100 to 177,314
GFF3291
GFF3292 - Chromosome initiation inhibitor, at 177,410 to 178,318
GFF3292
Position (kb) 176
177
178 Strain fitness (log2 ratio) -1
0
1 at 175.630 kb on - strand, within GFF3290 at 175.635 kb on + strand, within GFF3290 at 175.641 kb on + strand, within GFF3290 at 175.641 kb on + strand, within GFF3290 at 175.644 kb on + strand, within GFF3290 at 175.776 kb on + strand, within GFF3290 at 175.777 kb on - strand, within GFF3290 at 175.863 kb on + strand, within GFF3290 at 175.930 kb on - strand at 175.963 kb on - strand at 176.368 kb on + strand, within GFF3291 at 176.369 kb on - strand, within GFF3291 at 176.521 kb on + strand, within GFF3291 at 176.522 kb on - strand, within GFF3291 at 176.587 kb on + strand, within GFF3291 at 176.669 kb on - strand, within GFF3291 at 176.680 kb on + strand, within GFF3291 at 177.068 kb on - strand, within GFF3291 at 177.149 kb on - strand, within GFF3291 at 177.380 kb on - strand at 177.415 kb on + strand at 177.461 kb on + strand at 177.918 kb on - strand, within GFF3292
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 175,630 - GFF3290 0.56 +0.7 175,635 + GFF3290 0.57 -0.8 175,641 + GFF3290 0.58 +0.1 175,641 + GFF3290 0.58 +0.6 175,644 + GFF3290 0.58 +0.0 175,776 + GFF3290 0.73 +0.2 175,777 - GFF3290 0.73 -0.0 175,863 + GFF3290 0.83 +0.1 175,930 - -0.2 175,963 - -0.6 176,368 + GFF3291 0.22 -0.2 176,369 - GFF3291 0.22 +0.0 176,521 + GFF3291 0.35 -0.2 176,522 - GFF3291 0.35 +1.3 176,587 + GFF3291 0.40 -0.4 176,669 - GFF3291 0.47 +0.0 176,680 + GFF3291 0.48 +0.8 177,068 - GFF3291 0.80 +0.1 177,149 - GFF3291 0.86 +0.7 177,380 - -0.1 177,415 + +0.4 177,461 + -0.3 177,918 - GFF3292 0.56 -0.3
Or see this region's nucleotide sequence