Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3193 and GFF3194 are separated by 845 nucleotides GFF3194 and GFF3195 are separated by 2 nucleotides
GFF3193 - hypothetical protein, at 74,993 to 75,223
GFF3193
GFF3194 - hypothetical protein, at 76,069 to 79,665
GFF3194
GFF3195 - Putative DNA methylase, at 79,668 to 84,569
GFF3195
Position (kb) 76
77
78
79
80 Strain fitness (log2 ratio) -2
-1
0
1 at 75.085 kb on - strand, within GFF3193 at 75.763 kb on + strand at 75.764 kb on - strand at 76.304 kb on + strand at 76.926 kb on + strand, within GFF3194 at 76.933 kb on + strand, within GFF3194 at 76.972 kb on + strand, within GFF3194 at 76.973 kb on - strand, within GFF3194 at 76.973 kb on - strand, within GFF3194 at 77.189 kb on + strand, within GFF3194 at 77.189 kb on + strand, within GFF3194 at 77.214 kb on - strand, within GFF3194 at 77.413 kb on + strand, within GFF3194 at 77.413 kb on + strand, within GFF3194 at 77.414 kb on - strand, within GFF3194 at 77.623 kb on + strand, within GFF3194 at 77.751 kb on + strand, within GFF3194 at 77.752 kb on - strand, within GFF3194 at 77.752 kb on - strand, within GFF3194 at 77.752 kb on - strand, within GFF3194 at 78.061 kb on + strand, within GFF3194 at 78.062 kb on - strand, within GFF3194 at 78.062 kb on - strand, within GFF3194 at 78.345 kb on - strand, within GFF3194 at 78.377 kb on + strand, within GFF3194 at 78.378 kb on - strand, within GFF3194 at 78.858 kb on + strand, within GFF3194 at 79.124 kb on + strand, within GFF3194 at 79.314 kb on - strand at 79.314 kb on - strand at 79.397 kb on - strand at 79.496 kb on + strand at 79.934 kb on - strand at 80.005 kb on - strand at 80.491 kb on + strand, within GFF3195 at 80.492 kb on - strand, within GFF3195 at 80.519 kb on - strand, within GFF3195
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 75,085 - GFF3193 0.40 +0.4 75,763 + +0.3 75,764 - +0.3 76,304 + +0.4 76,926 + GFF3194 0.24 +0.4 76,933 + GFF3194 0.24 +0.3 76,972 + GFF3194 0.25 -0.3 76,973 - GFF3194 0.25 -1.2 76,973 - GFF3194 0.25 +0.7 77,189 + GFF3194 0.31 -0.0 77,189 + GFF3194 0.31 +0.2 77,214 - GFF3194 0.32 -0.2 77,413 + GFF3194 0.37 -0.3 77,413 + GFF3194 0.37 +0.6 77,414 - GFF3194 0.37 +0.7 77,623 + GFF3194 0.43 +1.1 77,751 + GFF3194 0.47 +0.1 77,752 - GFF3194 0.47 +0.8 77,752 - GFF3194 0.47 -0.8 77,752 - GFF3194 0.47 +0.4 78,061 + GFF3194 0.55 +0.9 78,062 - GFF3194 0.55 +0.1 78,062 - GFF3194 0.55 -0.3 78,345 - GFF3194 0.63 -0.2 78,377 + GFF3194 0.64 +0.7 78,378 - GFF3194 0.64 +0.7 78,858 + GFF3194 0.78 -0.6 79,124 + GFF3194 0.85 +0.3 79,314 - -0.5 79,314 - -0.7 79,397 - -2.3 79,496 + +0.1 79,934 - +0.3 80,005 - +0.6 80,491 + GFF3195 0.17 +0.1 80,492 - GFF3195 0.17 +0.4 80,519 - GFF3195 0.17 +0.1
Or see this region's nucleotide sequence