Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3153 and GFF3154 are separated by 164 nucleotides GFF3154 and GFF3155 are separated by 230 nucleotides GFF3155 and GFF3156 overlap by 4 nucleotides
GFF3153 - Conjugative transfer transglycosylase, at 30,026 to 30,559
GFF3153
GFF3154 - hypothetical protein, at 30,724 to 31,221
GFF3154
GFF3155 - hypothetical protein, at 31,452 to 32,297
GFF3155
GFF3156 - hypothetical protein, at 32,294 to 32,512
GFF3156
Position (kb) 31
32
33 Strain fitness (log2 ratio) -1
0
1
2 at 30.623 kb on + strand at 30.624 kb on - strand at 30.725 kb on + strand at 30.726 kb on - strand at 30.774 kb on + strand, within GFF3154 at 30.774 kb on + strand, within GFF3154 at 30.774 kb on + strand, within GFF3154 at 30.775 kb on - strand, within GFF3154 at 30.775 kb on - strand, within GFF3154 at 31.109 kb on + strand, within GFF3154 at 31.110 kb on - strand, within GFF3154 at 31.281 kb on + strand at 31.282 kb on - strand at 31.394 kb on - strand at 31.394 kb on - strand at 31.695 kb on + strand, within GFF3155 at 31.695 kb on + strand, within GFF3155 at 31.696 kb on - strand, within GFF3155 at 31.696 kb on - strand, within GFF3155 at 31.705 kb on + strand, within GFF3155 at 31.711 kb on + strand, within GFF3155 at 31.712 kb on + strand, within GFF3155 at 31.712 kb on - strand, within GFF3155 at 31.780 kb on + strand, within GFF3155 at 31.780 kb on + strand, within GFF3155 at 31.780 kb on + strand, within GFF3155 at 31.781 kb on - strand, within GFF3155 at 31.945 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.077 kb on - strand, within GFF3155 at 32.077 kb on - strand, within GFF3155 at 32.116 kb on + strand, within GFF3155 at 32.117 kb on - strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.153 kb on - strand, within GFF3155 at 32.153 kb on - strand, within GFF3155 at 32.186 kb on - strand, within GFF3155 at 33.044 kb on + strand at 33.044 kb on + strand at 33.044 kb on + strand at 33.045 kb on - strand at 33.054 kb on + strand at 33.054 kb on + strand at 33.054 kb on + strand at 33.054 kb on + strand at 33.055 kb on - strand at 33.055 kb on - strand at 33.055 kb on - strand at 33.068 kb on + strand at 33.068 kb on + strand at 33.080 kb on + strand at 33.081 kb on - strand at 33.127 kb on + strand at 33.127 kb on + strand at 33.127 kb on + strand at 33.129 kb on + strand at 33.129 kb on + strand at 33.130 kb on - strand at 33.162 kb on + strand at 33.175 kb on + strand at 33.175 kb on + strand at 33.176 kb on - strand at 33.176 kb on - strand at 33.218 kb on + strand at 33.218 kb on + strand at 33.219 kb on - strand at 33.219 kb on - strand at 33.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 30,623 + +0.8 30,624 - -0.6 30,725 + -1.3 30,726 - +0.2 30,774 + GFF3154 0.10 -0.2 30,774 + GFF3154 0.10 +0.8 30,774 + GFF3154 0.10 -0.3 30,775 - GFF3154 0.10 +0.5 30,775 - GFF3154 0.10 -1.1 31,109 + GFF3154 0.77 +0.6 31,110 - GFF3154 0.78 +0.4 31,281 + +0.4 31,282 - -0.1 31,394 - -0.1 31,394 - -0.1 31,695 + GFF3155 0.29 +0.6 31,695 + GFF3155 0.29 -0.4 31,696 - GFF3155 0.29 -0.2 31,696 - GFF3155 0.29 +0.4 31,705 + GFF3155 0.30 -0.1 31,711 + GFF3155 0.31 -0.5 31,712 + GFF3155 0.31 -0.2 31,712 - GFF3155 0.31 +0.0 31,780 + GFF3155 0.39 +0.3 31,780 + GFF3155 0.39 -1.3 31,780 + GFF3155 0.39 -1.3 31,781 - GFF3155 0.39 +2.0 31,945 + GFF3155 0.58 -0.7 32,076 + GFF3155 0.74 -0.3 32,076 + GFF3155 0.74 +1.3 32,076 + GFF3155 0.74 +0.9 32,076 + GFF3155 0.74 -0.7 32,077 - GFF3155 0.74 +0.7 32,077 - GFF3155 0.74 -0.7 32,116 + GFF3155 0.78 -0.4 32,117 - GFF3155 0.79 -0.5 32,152 + GFF3155 0.83 -0.4 32,152 + GFF3155 0.83 +0.2 32,152 + GFF3155 0.83 +1.1 32,152 + GFF3155 0.83 +0.6 32,153 - GFF3155 0.83 -0.3 32,153 - GFF3155 0.83 -0.1 32,186 - GFF3155 0.87 +0.3 33,044 + +0.8 33,044 + +0.1 33,044 + +0.5 33,045 - +0.3 33,054 + -0.7 33,054 + +0.1 33,054 + -0.2 33,054 + -0.6 33,055 - -0.1 33,055 - +2.7 33,055 - -0.2 33,068 + +0.2 33,068 + +0.1 33,080 + -0.1 33,081 - -0.0 33,127 + -1.3 33,127 + -1.0 33,127 + +1.2 33,129 + -0.2 33,129 + -0.1 33,130 - -0.1 33,162 + -0.1 33,175 + -0.4 33,175 + -0.4 33,176 - +0.1 33,176 - -1.7 33,218 + +0.2 33,218 + -0.1 33,219 - +0.4 33,219 - +0.1 33,257 + +0.3
Or see this region's nucleotide sequence