Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2950

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2948 and GFF2949 are separated by 12 nucleotidesGFF2949 and GFF2950 overlap by 4 nucleotidesGFF2950 and GFF2951 are separated by 90 nucleotidesGFF2951 and GFF2952 overlap by 4 nucleotides GFF2948 - FIG004694: Hypothetical protein, at 28,569 to 29,096 GFF2948 GFF2949 - Beta-propeller domains of methanol dehydrogenase type, at 29,109 to 30,023 GFF2949 GFF2950 - LemA family protein, at 30,020 to 30,628 GFF2950 GFF2951 - Alternative dihydrofolate reductase 3, at 30,719 to 31,156 GFF2951 GFF2952 - Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase, at 31,153 to 32,151 GFF2952 Position (kb) 30 31Strain fitness (log2 ratio) -2 -1 0 1at 29.587 kb on + strand, within GFF2949at 29.587 kb on + strand, within GFF2949at 29.587 kb on + strand, within GFF2949at 29.588 kb on - strand, within GFF2949at 29.779 kb on + strand, within GFF2949at 29.780 kb on - strand, within GFF2949at 29.780 kb on - strand, within GFF2949at 30.099 kb on + strand, within GFF2950at 30.099 kb on + strand, within GFF2950at 30.153 kb on + strand, within GFF2950at 30.153 kb on + strand, within GFF2950at 30.153 kb on + strand, within GFF2950at 30.153 kb on + strand, within GFF2950at 30.153 kb on + strand, within GFF2950at 30.153 kb on + strand, within GFF2950at 30.153 kb on + strand, within GFF2950at 30.153 kb on + strand, within GFF2950at 30.154 kb on - strand, within GFF2950at 30.154 kb on - strand, within GFF2950at 30.154 kb on - strand, within GFF2950at 30.174 kb on + strand, within GFF2950at 30.174 kb on + strand, within GFF2950at 30.174 kb on + strand, within GFF2950at 30.174 kb on + strand, within GFF2950at 30.175 kb on - strand, within GFF2950at 30.175 kb on - strand, within GFF2950at 30.175 kb on - strand, within GFF2950at 30.264 kb on + strand, within GFF2950at 30.264 kb on + strand, within GFF2950at 30.265 kb on - strand, within GFF2950at 30.489 kb on + strand, within GFF2950at 30.490 kb on - strand, within GFF2950at 30.552 kb on + strand, within GFF2950at 30.552 kb on + strand, within GFF2950at 30.552 kb on + strand, within GFF2950at 30.552 kb on + strand, within GFF2950at 30.628 kb on + strandat 30.628 kb on + strandat 30.629 kb on - strandat 30.629 kb on - strandat 30.629 kb on - strandat 30.629 kb on - strandat 30.668 kb on + strandat 30.668 kb on + strandat 30.668 kb on + strandat 30.668 kb on + strandat 30.668 kb on + strandat 30.669 kb on - strandat 30.669 kb on - strandat 30.669 kb on - strandat 30.669 kb on - strandat 30.669 kb on - strandat 30.670 kb on + strandat 30.670 kb on + strandat 30.712 kb on - strandat 30.773 kb on + strand, within GFF2951at 30.773 kb on + strand, within GFF2951at 30.773 kb on + strand, within GFF2951at 30.774 kb on - strand, within GFF2951at 30.774 kb on - strand, within GFF2951at 30.774 kb on - strand, within GFF2951at 30.774 kb on - strand, within GFF2951at 31.052 kb on + strand, within GFF2951at 31.052 kb on + strand, within GFF2951at 31.052 kb on + strand, within GFF2951at 31.052 kb on + strand, within GFF2951at 31.052 kb on + strand, within GFF2951at 31.052 kb on + strand, within GFF2951at 31.052 kb on + strand, within GFF2951at 31.052 kb on + strand, within GFF2951at 31.053 kb on - strand, within GFF2951at 31.053 kb on - strand, within GFF2951at 31.053 kb on - strand, within GFF2951at 31.053 kb on - strand, within GFF2951at 31.174 kb on + strandat 31.175 kb on - strandat 31.175 kb on - strandat 31.310 kb on + strand, within GFF2952at 31.310 kb on + strand, within GFF2952at 31.310 kb on + strand, within GFF2952at 31.310 kb on + strand, within GFF2952at 31.310 kb on + strand, within GFF2952at 31.311 kb on - strand, within GFF2952at 31.311 kb on - strand, within GFF2952at 31.311 kb on - strand, within GFF2952at 31.311 kb on - strand, within GFF2952at 31.311 kb on - strand, within GFF2952at 31.311 kb on - strand, within GFF2952at 31.394 kb on - strand, within GFF2952at 31.394 kb on - strand, within GFF2952at 31.394 kb on - strand, within GFF2952at 31.438 kb on + strand, within GFF2952at 31.438 kb on - strand, within GFF2952at 31.495 kb on + strand, within GFF2952at 31.495 kb on + strand, within GFF2952at 31.495 kb on + strand, within GFF2952at 31.496 kb on - strand, within GFF2952at 31.496 kb on - strand, within GFF2952

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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29,587 + GFF2949 0.52 +0.7
29,587 + GFF2949 0.52 -0.7
29,587 + GFF2949 0.52 -0.1
29,588 - GFF2949 0.52 -0.1
29,779 + GFF2949 0.73 -0.0
29,780 - GFF2949 0.73 +0.4
29,780 - GFF2949 0.73 -0.3
30,099 + GFF2950 0.13 +0.3
30,099 + GFF2950 0.13 +0.9
30,153 + GFF2950 0.22 -0.1
30,153 + GFF2950 0.22 -0.3
30,153 + GFF2950 0.22 +0.8
30,153 + GFF2950 0.22 -0.7
30,153 + GFF2950 0.22 -0.4
30,153 + GFF2950 0.22 -0.6
30,153 + GFF2950 0.22 -0.4
30,153 + GFF2950 0.22 -0.3
30,154 - GFF2950 0.22 +0.7
30,154 - GFF2950 0.22 -0.2
30,154 - GFF2950 0.22 -0.3
30,174 + GFF2950 0.25 +0.0
30,174 + GFF2950 0.25 -0.1
30,174 + GFF2950 0.25 +0.4
30,174 + GFF2950 0.25 -0.7
30,175 - GFF2950 0.25 -0.7
30,175 - GFF2950 0.25 -1.5
30,175 - GFF2950 0.25 -0.4
30,264 + GFF2950 0.40 +0.3
30,264 + GFF2950 0.40 -0.1
30,265 - GFF2950 0.40 -0.1
30,489 + GFF2950 0.77 +0.1
30,490 - GFF2950 0.77 +0.0
30,552 + GFF2950 0.87 +0.5
30,552 + GFF2950 0.87 +1.3
30,552 + GFF2950 0.87 -0.2
30,552 + GFF2950 0.87 -1.1
30,628 + +0.6
30,628 + +0.2
30,629 - -0.2
30,629 - -0.8
30,629 - -1.1
30,629 - +0.7
30,668 + +0.6
30,668 + +0.9
30,668 + -0.2
30,668 + -1.5
30,668 + +0.1
30,669 - -2.0
30,669 - -0.4
30,669 - -0.0
30,669 - -0.2
30,669 - +0.3
30,670 + +1.1
30,670 + -0.3
30,712 - -0.7
30,773 + GFF2951 0.12 +0.0
30,773 + GFF2951 0.12 +0.1
30,773 + GFF2951 0.12 -0.2
30,774 - GFF2951 0.13 +0.1
30,774 - GFF2951 0.13 +0.3
30,774 - GFF2951 0.13 +0.3
30,774 - GFF2951 0.13 +0.4
31,052 + GFF2951 0.76 +0.2
31,052 + GFF2951 0.76 +0.3
31,052 + GFF2951 0.76 +0.7
31,052 + GFF2951 0.76 -0.6
31,052 + GFF2951 0.76 +0.2
31,052 + GFF2951 0.76 +0.2
31,052 + GFF2951 0.76 -1.0
31,052 + GFF2951 0.76 -0.2
31,053 - GFF2951 0.76 +1.5
31,053 - GFF2951 0.76 +0.9
31,053 - GFF2951 0.76 -0.1
31,053 - GFF2951 0.76 +0.0
31,174 + +0.2
31,175 - -0.4
31,175 - +0.1
31,310 + GFF2952 0.16 -0.5
31,310 + GFF2952 0.16 -0.2
31,310 + GFF2952 0.16 +0.1
31,310 + GFF2952 0.16 +0.6
31,310 + GFF2952 0.16 +0.2
31,311 - GFF2952 0.16 -0.7
31,311 - GFF2952 0.16 -0.2
31,311 - GFF2952 0.16 +0.2
31,311 - GFF2952 0.16 +0.0
31,311 - GFF2952 0.16 -0.7
31,311 - GFF2952 0.16 +0.2
31,394 - GFF2952 0.24 -0.2
31,394 - GFF2952 0.24 +0.2
31,394 - GFF2952 0.24 -0.0
31,438 + GFF2952 0.29 +0.5
31,438 - GFF2952 0.29 -0.0
31,495 + GFF2952 0.34 +0.1
31,495 + GFF2952 0.34 -0.4
31,495 + GFF2952 0.34 +0.7
31,496 - GFF2952 0.34 +0.5
31,496 - GFF2952 0.34 -0.6

Or see this region's nucleotide sequence