Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2928

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
10,999	+		GFF2926	0.83	-0.7
10,999	+		GFF2926	0.83	-0.4
10,999	+		GFF2926	0.83	-0.1
10,999	+		GFF2926	0.83	-0.7
10,999	+		GFF2926	0.83	+0.5
10,999	+		GFF2926	0.83	+0.3
10,999	+		GFF2926	0.83	+0.3
10,999	+		GFF2926	0.83	-0.0
10,999	+		GFF2926	0.83	+0.6
11,000	-		GFF2926	0.83	-0.2
11,000	-		GFF2926	0.83	-1.4
11,000	-		GFF2926	0.83	-0.0
11,000	-		GFF2926	0.83	-0.9
11,000	-		GFF2926	0.83	+0.2
11,000	-		GFF2926	0.83	-0.6
11,000	-		GFF2926	0.83	-0.1
11,000	-		GFF2926	0.83	-0.1
11,002	+		GFF2926	0.83	-1.9
11,003	-		GFF2926	0.84	+0.2
11,003	-		GFF2926	0.84	-1.3
11,003	-		GFF2926	0.84	-0.4
11,003	-		GFF2926	0.84	+0.8
11,003	-		GFF2926	0.84	-0.3
11,003	-		GFF2926	0.84	+0.2
11,003	-		GFF2926	0.84	-0.5
11,184	+				-0.0
11,184	+				-0.1
11,184	+				-1.5
11,184	+				-1.5
11,184	+				-0.3
11,184	+				-0.9
11,184	+				-1.9
11,184	+				-0.3
11,185	-				+0.2
11,185	-				+0.4
11,192	+				-0.0
11,193	-				-0.4
11,193	-				-0.5
11,766	+		GFF2927	0.85	+0.3
11,767	-		GFF2927	0.85	+0.0
11,767	-		GFF2927	0.85	-0.4
11,783	-		GFF2927	0.88	+0.4
11,963	+				-0.1
11,963	+				+1.0
11,963	+				-0.5
11,963	+				+0.1
11,963	+				+0.1
11,963	+				+0.3
11,964	-				-0.5
12,068	+		GFF2928	0.13	+0.5
12,068	+		GFF2928	0.13	+0.1
12,069	-		GFF2928	0.13	-0.0
12,069	-		GFF2928	0.13	-0.6
12,069	-		GFF2928	0.13	-0.1
12,542	+		GFF2928	0.52	-0.8
12,542	+		GFF2928	0.52	-0.1
12,542	+		GFF2928	0.52	+0.3
12,543	-		GFF2928	0.52	+0.1
12,543	-		GFF2928	0.52	-0.1
12,543	-		GFF2928	0.52	-0.2
12,543	-		GFF2928	0.52	-1.1
12,579	-		GFF2928	0.55	+0.4
12,641	+		GFF2928	0.60	+0.1
12,641	+		GFF2928	0.60	-1.1
12,641	+		GFF2928	0.60	-0.7
12,641	+		GFF2928	0.60	+0.2
12,642	-		GFF2928	0.60	-0.4
12,642	-		GFF2928	0.60	-0.1
12,642	-		GFF2928	0.60	+0.3
12,643	+		GFF2928	0.60	-0.9
12,643	+		GFF2928	0.60	-0.1
12,644	-		GFF2928	0.60	-0.2
12,644	-		GFF2928	0.60	-0.1
12,644	-		GFF2928	0.60	-0.3
12,851	+		GFF2928	0.77	+0.4
12,851	+		GFF2928	0.77	-0.2
12,852	-		GFF2928	0.77	-1.5
12,852	-		GFF2928	0.77	+0.3
12,941	+		GFF2928	0.84	+0.6
12,941	+		GFF2928	0.84	+2.0
12,941	+		GFF2928	0.84	-1.5
12,942	-		GFF2928	0.84	-0.7
13,085	+				+0.3
13,085	+				+0.9
13,085	+				+0.2
13,085	+				-0.3
13,085	+				-0.8
13,086	-				-0.1
13,086	-				-0.0
13,086	-				-0.2
13,086	-				+0.5
13,086	-				-0.1
13,086	-				+0.4
13,137	-				-0.2
13,137	-				+0.1
13,592	+				-0.5
13,592	+				-0.0
13,592	+				+0.7
13,592	+				+0.1
13,592	+				+0.5
13,593	-				-1.5
13,593	-				-0.3
13,593	-				-1.1
13,593	-				+0.1
13,922	+				+0.0
13,922	+				-0.5
13,923	-				-0.3
13,923	-				-0.8
13,923	-				+0.2