Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF279 and GFF280 are separated by 258 nucleotides GFF280 and GFF281 are separated by 190 nucleotides
GFF279 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 293,611 to 295,356
GFF279
GFF280 - Transcriptional regulators, LysR family, at 295,615 to 296,550
GFF280
GFF281 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 296,741 to 297,928
GFF281
Position (kb) 295
296
297 Strain fitness (log2 ratio) -2
-1
0
1 at 294.712 kb on + strand, within GFF279 at 294.712 kb on + strand, within GFF279 at 294.712 kb on + strand, within GFF279 at 294.712 kb on + strand, within GFF279 at 294.713 kb on - strand, within GFF279 at 294.713 kb on - strand, within GFF279 at 294.713 kb on - strand, within GFF279 at 294.772 kb on + strand, within GFF279 at 294.773 kb on - strand, within GFF279 at 294.932 kb on - strand, within GFF279 at 294.997 kb on + strand, within GFF279 at 295.241 kb on - strand at 295.617 kb on - strand at 295.617 kb on - strand at 296.210 kb on + strand, within GFF280 at 296.211 kb on - strand, within GFF280 at 296.211 kb on - strand, within GFF280 at 296.211 kb on - strand, within GFF280 at 296.213 kb on + strand, within GFF280 at 296.213 kb on + strand, within GFF280 at 296.214 kb on - strand, within GFF280 at 296.501 kb on + strand at 296.501 kb on + strand at 296.501 kb on + strand at 296.502 kb on - strand at 296.586 kb on - strand at 296.591 kb on + strand at 296.607 kb on - strand at 296.617 kb on + strand at 296.622 kb on + strand at 296.634 kb on - strand at 296.634 kb on - strand at 296.664 kb on + strand at 296.664 kb on + strand at 296.664 kb on + strand at 296.664 kb on + strand at 296.664 kb on + strand at 296.665 kb on - strand at 296.665 kb on - strand at 296.727 kb on + strand at 296.727 kb on + strand at 296.728 kb on - strand at 296.897 kb on + strand, within GFF281 at 296.897 kb on + strand, within GFF281 at 296.897 kb on + strand, within GFF281 at 296.898 kb on - strand, within GFF281 at 296.898 kb on - strand, within GFF281 at 296.898 kb on - strand, within GFF281 at 297.180 kb on - strand, within GFF281 at 297.180 kb on - strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.218 kb on + strand, within GFF281 at 297.219 kb on - strand, within GFF281 at 297.219 kb on - strand, within GFF281 at 297.338 kb on + strand, within GFF281 at 297.402 kb on - strand, within GFF281 at 297.402 kb on - strand, within GFF281 at 297.422 kb on + strand, within GFF281 at 297.422 kb on + strand, within GFF281 at 297.422 kb on + strand, within GFF281 at 297.423 kb on - strand, within GFF281 at 297.473 kb on + strand, within GFF281 at 297.473 kb on + strand, within GFF281 at 297.474 kb on - strand, within GFF281
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 294,712 + GFF279 0.63 +0.3 294,712 + GFF279 0.63 +0.0 294,712 + GFF279 0.63 -0.5 294,712 + GFF279 0.63 +0.1 294,713 - GFF279 0.63 +0.5 294,713 - GFF279 0.63 +0.6 294,713 - GFF279 0.63 -0.6 294,772 + GFF279 0.66 -0.6 294,773 - GFF279 0.67 -0.3 294,932 - GFF279 0.76 +0.1 294,997 + GFF279 0.79 +0.2 295,241 - -0.1 295,617 - -0.1 295,617 - +0.0 296,210 + GFF280 0.64 +0.1 296,211 - GFF280 0.64 +0.2 296,211 - GFF280 0.64 +0.3 296,211 - GFF280 0.64 +0.4 296,213 + GFF280 0.64 +0.1 296,213 + GFF280 0.64 -0.4 296,214 - GFF280 0.64 +0.4 296,501 + -0.3 296,501 + -0.3 296,501 + -0.1 296,502 - +0.3 296,586 - -0.0 296,591 + -0.4 296,607 - +0.0 296,617 + +0.3 296,622 + +0.2 296,634 - -0.3 296,634 - +0.4 296,664 + -0.4 296,664 + +0.6 296,664 + +0.3 296,664 + -0.8 296,664 + -0.4 296,665 - +0.1 296,665 - -0.1 296,727 + +0.2 296,727 + -1.0 296,728 - +0.4 296,897 + GFF281 0.13 -2.1 296,897 + GFF281 0.13 +0.5 296,897 + GFF281 0.13 +0.2 296,898 - GFF281 0.13 +0.2 296,898 - GFF281 0.13 +0.3 296,898 - GFF281 0.13 -0.4 297,180 - GFF281 0.37 -0.1 297,180 - GFF281 0.37 -0.8 297,218 + GFF281 0.40 +0.1 297,218 + GFF281 0.40 -0.5 297,218 + GFF281 0.40 +0.1 297,218 + GFF281 0.40 -0.2 297,218 + GFF281 0.40 -0.2 297,218 + GFF281 0.40 -0.5 297,218 + GFF281 0.40 -0.2 297,218 + GFF281 0.40 -0.2 297,219 - GFF281 0.40 +0.1 297,219 - GFF281 0.40 -0.1 297,338 + GFF281 0.50 +0.4 297,402 - GFF281 0.56 +0.3 297,402 - GFF281 0.56 -0.1 297,422 + GFF281 0.57 -0.4 297,422 + GFF281 0.57 -0.7 297,422 + GFF281 0.57 -0.2 297,423 - GFF281 0.57 +0.1 297,473 + GFF281 0.62 +0.9 297,473 + GFF281 0.62 +0.7 297,474 - GFF281 0.62 +0.1
Or see this region's nucleotide sequence