Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF278

Experiment: Ying_Others16 rep C; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF276 and GFF277 are separated by 284 nucleotidesGFF277 and GFF278 are separated by 50 nucleotidesGFF278 and GFF279 are separated by 35 nucleotides GFF276 - Peptide chain release factor 2; programmed frameshift-containing, at 290,866 to 291,765 GFF276 GFF277 - hypothetical protein, at 292,050 to 292,607 GFF277 GFF278 - Alpha/beta hydrolase fold, at 292,658 to 293,575 GFF278 GFF279 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 293,611 to 295,356 GFF279 Position (kb) 292 293 294Strain fitness (log2 ratio) -1 0 1at 291.993 kb on - strandat 291.997 kb on - strandat 292.195 kb on + strand, within GFF277at 292.195 kb on + strand, within GFF277at 292.195 kb on + strand, within GFF277at 292.195 kb on + strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.207 kb on + strand, within GFF277at 292.207 kb on + strand, within GFF277at 292.208 kb on - strand, within GFF277at 292.208 kb on - strand, within GFF277at 292.208 kb on - strand, within GFF277at 292.214 kb on - strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.295 kb on - strand, within GFF277at 292.424 kb on - strand, within GFF277at 292.424 kb on - strand, within GFF277at 292.444 kb on + strand, within GFF277at 292.444 kb on + strand, within GFF277at 292.608 kb on - strandat 292.618 kb on + strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.654 kb on + strandat 292.654 kb on + strandat 292.655 kb on - strandat 292.655 kb on - strandat 292.655 kb on - strandat 292.655 kb on - strandat 292.878 kb on + strand, within GFF278at 292.879 kb on - strand, within GFF278at 292.906 kb on - strand, within GFF278at 293.067 kb on + strand, within GFF278at 293.067 kb on + strand, within GFF278at 293.220 kb on + strand, within GFF278at 293.220 kb on + strand, within GFF278at 293.221 kb on + strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.331 kb on + strand, within GFF278at 293.331 kb on + strand, within GFF278at 293.331 kb on + strand, within GFF278at 293.331 kb on + strand, within GFF278at 293.332 kb on - strand, within GFF278at 293.332 kb on - strand, within GFF278at 293.332 kb on - strand, within GFF278at 293.332 kb on - strand, within GFF278at 293.332 kb on - strand, within GFF278at 293.517 kb on + strandat 293.517 kb on + strandat 293.571 kb on + strandat 293.571 kb on + strandat 293.571 kb on + strandat 293.571 kb on + strandat 293.572 kb on - strandat 293.662 kb on + strandat 293.662 kb on + strandat 293.663 kb on - strandat 293.663 kb on - strandat 293.815 kb on + strand, within GFF279at 293.815 kb on + strand, within GFF279at 293.816 kb on - strand, within GFF279at 293.816 kb on - strand, within GFF279at 293.932 kb on + strand, within GFF279at 293.932 kb on + strand, within GFF279at 293.933 kb on - strand, within GFF279at 293.933 kb on - strand, within GFF279at 293.933 kb on - strand, within GFF279at 294.208 kb on + strand, within GFF279at 294.209 kb on - strand, within GFF279at 294.209 kb on - strand, within GFF279at 294.209 kb on - strand, within GFF279at 294.235 kb on + strand, within GFF279at 294.235 kb on + strand, within GFF279at 294.236 kb on - strand, within GFF279at 294.464 kb on - strand, within GFF279

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
remove
291,993 - -0.1
291,997 - -0.8
292,195 + GFF277 0.26 +0.1
292,195 + GFF277 0.26 +0.8
292,195 + GFF277 0.26 +0.1
292,195 + GFF277 0.26 -0.9
292,196 - GFF277 0.26 +0.0
292,196 - GFF277 0.26 -0.0
292,196 - GFF277 0.26 +0.2
292,196 - GFF277 0.26 +0.7
292,196 - GFF277 0.26 -0.4
292,207 + GFF277 0.28 +0.1
292,207 + GFF277 0.28 +0.0
292,208 - GFF277 0.28 -0.3
292,208 - GFF277 0.28 -1.2
292,208 - GFF277 0.28 +0.2
292,214 - GFF277 0.29 -0.9
292,240 + GFF277 0.34 +0.1
292,240 + GFF277 0.34 +0.5
292,240 + GFF277 0.34 +0.3
292,240 + GFF277 0.34 +0.1
292,240 + GFF277 0.34 +0.7
292,240 + GFF277 0.34 +0.2
292,240 + GFF277 0.34 +0.2
292,241 - GFF277 0.34 -0.1
292,241 - GFF277 0.34 +0.5
292,241 - GFF277 0.34 +0.2
292,241 - GFF277 0.34 +0.5
292,241 - GFF277 0.34 +0.6
292,241 - GFF277 0.34 +0.7
292,241 - GFF277 0.34 -0.3
292,241 - GFF277 0.34 +0.5
292,241 - GFF277 0.34 +0.2
292,241 - GFF277 0.34 +0.5
292,241 - GFF277 0.34 -0.3
292,295 - GFF277 0.44 +0.4
292,424 - GFF277 0.67 -0.7
292,424 - GFF277 0.67 -0.3
292,444 + GFF277 0.71 -0.5
292,444 + GFF277 0.71 +0.4
292,608 - +0.6
292,618 + -0.3
292,619 - -0.4
292,619 - -0.0
292,619 - +0.1
292,619 - +0.0
292,619 - -0.1
292,619 - -0.1
292,654 + -0.9
292,654 + -1.6
292,655 - +0.9
292,655 - -0.1
292,655 - +0.4
292,655 - -0.0
292,878 + GFF278 0.24 +1.3
292,879 - GFF278 0.24 +0.4
292,906 - GFF278 0.27 +0.7
293,067 + GFF278 0.45 -0.2
293,067 + GFF278 0.45 +0.0
293,220 + GFF278 0.61 -0.1
293,220 + GFF278 0.61 +0.1
293,221 + GFF278 0.61 +0.6
293,221 - GFF278 0.61 +1.2
293,221 - GFF278 0.61 -0.2
293,221 - GFF278 0.61 +0.2
293,221 - GFF278 0.61 -0.5
293,221 - GFF278 0.61 -0.4
293,221 - GFF278 0.61 +0.2
293,331 + GFF278 0.73 -0.0
293,331 + GFF278 0.73 -0.3
293,331 + GFF278 0.73 +1.2
293,331 + GFF278 0.73 +0.1
293,332 - GFF278 0.73 +0.6
293,332 - GFF278 0.73 +0.6
293,332 - GFF278 0.73 +0.2
293,332 - GFF278 0.73 -0.5
293,332 - GFF278 0.73 -0.1
293,517 + +1.0
293,517 + -0.1
293,571 + +0.2
293,571 + +0.0
293,571 + -0.2
293,571 + -0.1
293,572 - +0.2
293,662 + -0.9
293,662 + -0.0
293,663 - +0.1
293,663 - -0.1
293,815 + GFF279 0.12 -0.3
293,815 + GFF279 0.12 +0.4
293,816 - GFF279 0.12 +0.2
293,816 - GFF279 0.12 -0.4
293,932 + GFF279 0.18 -0.3
293,932 + GFF279 0.18 -0.2
293,933 - GFF279 0.18 +0.0
293,933 - GFF279 0.18 +0.1
293,933 - GFF279 0.18 +0.2
294,208 + GFF279 0.34 -1.3
294,209 - GFF279 0.34 -0.3
294,209 - GFF279 0.34 +0.2
294,209 - GFF279 0.34 -0.0
294,235 + GFF279 0.36 +0.4
294,235 + GFF279 0.36 -0.1
294,236 - GFF279 0.36 -0.0
294,464 - GFF279 0.49 -0.1

Or see this region's nucleotide sequence