Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF276

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF275 and GFF276 are separated by 3 nucleotidesGFF276 and GFF277 are separated by 284 nucleotidesGFF277 and GFF278 are separated by 50 nucleotides GFF275 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 288,154 to 290,862 GFF275 GFF276 - Peptide chain release factor 2; programmed frameshift-containing, at 290,866 to 291,765 GFF276 GFF277 - hypothetical protein, at 292,050 to 292,607 GFF277 GFF278 - Alpha/beta hydrolase fold, at 292,658 to 293,575 GFF278 Position (kb) 290 291 292Strain fitness (log2 ratio) -1 0 1at 290.006 kb on + strand, within GFF275at 290.006 kb on + strand, within GFF275at 290.006 kb on + strand, within GFF275at 290.006 kb on + strand, within GFF275at 290.007 kb on - strand, within GFF275at 290.007 kb on - strand, within GFF275at 290.189 kb on + strand, within GFF275at 290.189 kb on + strand, within GFF275at 290.190 kb on - strand, within GFF275at 290.190 kb on - strand, within GFF275at 290.190 kb on - strand, within GFF275at 290.190 kb on - strand, within GFF275at 290.276 kb on + strand, within GFF275at 290.276 kb on + strand, within GFF275at 290.276 kb on + strand, within GFF275at 290.276 kb on + strand, within GFF275at 290.277 kb on - strand, within GFF275at 290.277 kb on - strand, within GFF275at 290.277 kb on - strand, within GFF275at 290.388 kb on - strand, within GFF275at 290.420 kb on + strand, within GFF275at 290.420 kb on + strand, within GFF275at 290.421 kb on - strand, within GFF275at 290.421 kb on - strand, within GFF275at 290.421 kb on - strand, within GFF275at 290.453 kb on + strand, within GFF275at 290.453 kb on + strand, within GFF275at 290.453 kb on + strand, within GFF275at 290.454 kb on - strand, within GFF275at 290.454 kb on - strand, within GFF275at 290.513 kb on + strand, within GFF275at 290.798 kb on + strandat 290.798 kb on + strandat 290.798 kb on + strandat 290.813 kb on + strandat 290.814 kb on - strandat 291.993 kb on - strandat 291.997 kb on - strandat 292.195 kb on + strand, within GFF277at 292.195 kb on + strand, within GFF277at 292.195 kb on + strand, within GFF277at 292.195 kb on + strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.207 kb on + strand, within GFF277at 292.207 kb on + strand, within GFF277at 292.208 kb on - strand, within GFF277at 292.208 kb on - strand, within GFF277at 292.208 kb on - strand, within GFF277at 292.214 kb on - strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.295 kb on - strand, within GFF277at 292.424 kb on - strand, within GFF277at 292.424 kb on - strand, within GFF277at 292.444 kb on + strand, within GFF277at 292.444 kb on + strand, within GFF277at 292.608 kb on - strandat 292.618 kb on + strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.654 kb on + strandat 292.654 kb on + strandat 292.655 kb on - strandat 292.655 kb on - strandat 292.655 kb on - strandat 292.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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290,006 + GFF275 0.68 +0.5
290,006 + GFF275 0.68 -0.4
290,006 + GFF275 0.68 -1.6
290,006 + GFF275 0.68 -0.4
290,007 - GFF275 0.68 -0.8
290,007 - GFF275 0.68 +0.0
290,189 + GFF275 0.75 -1.4
290,189 + GFF275 0.75 +0.2
290,190 - GFF275 0.75 +0.1
290,190 - GFF275 0.75 -0.3
290,190 - GFF275 0.75 -0.2
290,190 - GFF275 0.75 +0.0
290,276 + GFF275 0.78 -0.2
290,276 + GFF275 0.78 +0.2
290,276 + GFF275 0.78 +1.5
290,276 + GFF275 0.78 +0.4
290,277 - GFF275 0.78 -0.9
290,277 - GFF275 0.78 +0.0
290,277 - GFF275 0.78 -0.3
290,388 - GFF275 0.82 +0.7
290,420 + GFF275 0.84 -1.1
290,420 + GFF275 0.84 +0.3
290,421 - GFF275 0.84 +0.4
290,421 - GFF275 0.84 +1.0
290,421 - GFF275 0.84 +0.5
290,453 + GFF275 0.85 -0.5
290,453 + GFF275 0.85 -0.2
290,453 + GFF275 0.85 -0.6
290,454 - GFF275 0.85 +0.2
290,454 - GFF275 0.85 -0.1
290,513 + GFF275 0.87 -0.1
290,798 + -0.1
290,798 + -0.2
290,798 + +0.5
290,813 + -1.0
290,814 - -0.3
291,993 - -0.1
291,997 - -0.8
292,195 + GFF277 0.26 +0.1
292,195 + GFF277 0.26 +0.8
292,195 + GFF277 0.26 +0.1
292,195 + GFF277 0.26 -0.9
292,196 - GFF277 0.26 +0.0
292,196 - GFF277 0.26 -0.0
292,196 - GFF277 0.26 +0.2
292,196 - GFF277 0.26 +0.7
292,196 - GFF277 0.26 -0.4
292,207 + GFF277 0.28 +0.1
292,207 + GFF277 0.28 +0.0
292,208 - GFF277 0.28 -0.3
292,208 - GFF277 0.28 -1.2
292,208 - GFF277 0.28 +0.2
292,214 - GFF277 0.29 -0.9
292,240 + GFF277 0.34 +0.1
292,240 + GFF277 0.34 +0.5
292,240 + GFF277 0.34 +0.3
292,240 + GFF277 0.34 +0.1
292,240 + GFF277 0.34 +0.7
292,240 + GFF277 0.34 +0.2
292,240 + GFF277 0.34 +0.2
292,241 - GFF277 0.34 -0.1
292,241 - GFF277 0.34 +0.5
292,241 - GFF277 0.34 +0.2
292,241 - GFF277 0.34 +0.5
292,241 - GFF277 0.34 +0.6
292,241 - GFF277 0.34 +0.7
292,241 - GFF277 0.34 -0.3
292,241 - GFF277 0.34 +0.5
292,241 - GFF277 0.34 +0.2
292,241 - GFF277 0.34 +0.5
292,241 - GFF277 0.34 -0.3
292,295 - GFF277 0.44 +0.4
292,424 - GFF277 0.67 -0.7
292,424 - GFF277 0.67 -0.3
292,444 + GFF277 0.71 -0.5
292,444 + GFF277 0.71 +0.4
292,608 - +0.6
292,618 + -0.3
292,619 - -0.4
292,619 - -0.0
292,619 - +0.1
292,619 - +0.0
292,619 - -0.1
292,619 - -0.1
292,654 + -0.9
292,654 + -1.6
292,655 - +0.9
292,655 - -0.1
292,655 - +0.4
292,655 - -0.0

Or see this region's nucleotide sequence