Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2576

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2574 and GFF2575 overlap by 1 nucleotidesGFF2575 and GFF2576 overlap by 8 nucleotidesGFF2576 and GFF2577 are separated by 24 nucleotides GFF2574 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 166,083 to 167,063 GFF2574 GFF2575 - Branched-chain amino acid transport protein AzlC, at 167,063 to 167,806 GFF2575 GFF2576 - Probable transmembrane protein, at 167,799 to 168,134 GFF2576 GFF2577 - Phosphoglycerol transferase I (EC 2.7.8.20), at 168,159 to 170,732 GFF2577 Position (kb) 167 168 169Strain fitness (log2 ratio) -2 -1 0 1at 167.099 kb on + strandat 167.100 kb on - strandat 167.100 kb on - strandat 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.396 kb on + strand, within GFF2575at 167.396 kb on + strand, within GFF2575at 167.396 kb on + strand, within GFF2575at 167.397 kb on - strand, within GFF2575at 167.397 kb on - strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.418 kb on - strand, within GFF2575at 167.418 kb on - strand, within GFF2575at 167.418 kb on - strand, within GFF2575at 167.486 kb on + strand, within GFF2575at 167.486 kb on + strand, within GFF2575at 167.487 kb on - strand, within GFF2575at 167.487 kb on - strand, within GFF2575at 167.487 kb on - strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.546 kb on - strand, within GFF2575at 167.932 kb on - strand, within GFF2576at 168.102 kb on + strandat 168.103 kb on - strandat 168.181 kb on + strandat 168.182 kb on - strandat 168.197 kb on - strandat 168.271 kb on + strandat 168.272 kb on - strandat 168.272 kb on - strandat 168.272 kb on - strandat 168.272 kb on - strandat 168.331 kb on + strandat 168.331 kb on + strandat 168.331 kb on + strandat 168.332 kb on - strandat 168.332 kb on - strandat 168.568 kb on + strand, within GFF2577at 168.568 kb on + strand, within GFF2577at 168.620 kb on - strand, within GFF2577at 168.670 kb on + strand, within GFF2577at 168.670 kb on + strand, within GFF2577at 168.671 kb on - strand, within GFF2577at 168.923 kb on - strand, within GFF2577at 168.958 kb on + strand, within GFF2577at 169.117 kb on + strand, within GFF2577at 169.117 kb on + strand, within GFF2577

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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167,099 + -0.2
167,100 - -0.0
167,100 - -0.1
167,355 - GFF2575 0.39 -0.4
167,355 - GFF2575 0.39 -0.1
167,355 - GFF2575 0.39 -0.0
167,355 - GFF2575 0.39 -0.4
167,355 - GFF2575 0.39 -0.8
167,396 + GFF2575 0.45 +0.5
167,396 + GFF2575 0.45 +0.3
167,396 + GFF2575 0.45 +0.1
167,397 - GFF2575 0.45 -0.4
167,397 - GFF2575 0.45 +0.0
167,417 + GFF2575 0.48 +0.9
167,417 + GFF2575 0.48 +0.0
167,417 + GFF2575 0.48 +0.0
167,417 + GFF2575 0.48 +1.4
167,417 + GFF2575 0.48 -0.2
167,417 + GFF2575 0.48 -0.4
167,417 + GFF2575 0.48 +0.2
167,418 - GFF2575 0.48 -0.5
167,418 - GFF2575 0.48 -0.4
167,418 - GFF2575 0.48 -0.4
167,486 + GFF2575 0.57 -0.6
167,486 + GFF2575 0.57 +0.2
167,487 - GFF2575 0.57 +0.4
167,487 - GFF2575 0.57 -1.3
167,487 - GFF2575 0.57 +0.0
167,513 + GFF2575 0.60 -0.5
167,513 + GFF2575 0.60 +0.4
167,513 + GFF2575 0.60 -0.4
167,513 + GFF2575 0.60 +0.5
167,514 - GFF2575 0.61 -0.5
167,514 - GFF2575 0.61 -1.4
167,514 - GFF2575 0.61 +0.1
167,514 - GFF2575 0.61 +0.8
167,514 - GFF2575 0.61 +0.4
167,514 - GFF2575 0.61 -0.3
167,514 - GFF2575 0.61 +0.1
167,546 - GFF2575 0.65 -0.7
167,932 - GFF2576 0.40 -0.5
168,102 + +0.0
168,103 - -2.1
168,181 + -0.4
168,182 - +0.4
168,197 - +0.4
168,271 + +0.4
168,272 - +0.6
168,272 - -0.2
168,272 - +0.9
168,272 - +0.2
168,331 + +0.2
168,331 + +0.2
168,331 + +0.1
168,332 - -0.2
168,332 - +1.0
168,568 + GFF2577 0.16 -0.2
168,568 + GFF2577 0.16 -0.2
168,620 - GFF2577 0.18 +0.5
168,670 + GFF2577 0.20 +0.1
168,670 + GFF2577 0.20 +0.4
168,671 - GFF2577 0.20 -0.3
168,923 - GFF2577 0.30 +0.2
168,958 + GFF2577 0.31 -1.1
169,117 + GFF2577 0.37 +0.1
169,117 + GFF2577 0.37 +0.4

Or see this region's nucleotide sequence