Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2344

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
1,237,513	-		GFF2343	0.60	+0.1
1,237,546	+		GFF2343	0.62	-0.3
1,237,620	+		GFF2343	0.67	+0.2
1,237,663	+		GFF2343	0.70	+0.8
1,237,663	+		GFF2343	0.70	-0.0
1,237,664	-		GFF2343	0.70	-0.0
1,237,664	-		GFF2343	0.70	+0.8
1,237,664	-		GFF2343	0.70	+0.4
1,237,664	-		GFF2343	0.70	-0.6
1,237,664	-		GFF2343	0.70	-1.5
1,237,664	-		GFF2343	0.70	+0.5
1,237,684	+		GFF2343	0.72	-0.1
1,237,684	+		GFF2343	0.72	+1.6
1,237,685	-		GFF2343	0.72	+0.1
1,237,685	-		GFF2343	0.72	+0.2
1,237,732	+		GFF2343	0.75	-0.0
1,237,759	+		GFF2343	0.77	-0.2
1,237,759	+		GFF2343	0.77	-0.0
1,237,760	-		GFF2343	0.77	+0.5
1,237,760	-		GFF2343	0.77	+0.9
1,237,760	-		GFF2343	0.77	-0.6
1,237,812	+		GFF2343	0.80	+1.2
1,237,812	+		GFF2343	0.80	-0.1
1,237,813	-		GFF2343	0.81	+0.1
1,237,813	-		GFF2343	0.81	-1.2
1,237,932	+		GFF2343	0.89	-0.3
1,237,932	+		GFF2343	0.89	+0.1
1,237,932	+		GFF2343	0.89	+0.3
1,237,933	-		GFF2343	0.89	-1.3
1,237,933	-		GFF2343	0.89	-0.5
1,238,020	+				+0.3
1,238,020	+				+0.2
1,238,020	+				-1.0
1,238,020	+				+0.6
1,238,020	+				+0.1
1,238,020	+				+1.0
1,238,020	+				-0.1
1,238,021	-				+0.6
1,238,021	-				+0.4
1,238,021	-				-0.2
1,238,060	+				+0.4
1,238,061	-				-0.5
1,238,102	+				-1.1
1,238,103	-				+0.8
1,238,103	-				+0.0
1,238,189	+				+0.7
1,238,190	-				-0.3
1,238,190	-				+1.0
1,238,190	-				-0.8
1,238,190	-				-0.7
1,238,190	-				+0.4
1,238,220	+				+0.6
1,238,220	+				+0.1
1,238,220	+				+1.9
1,238,220	+				-0.5
1,238,220	+				+0.1
1,238,221	-				+0.0
1,238,221	-				-2.8
1,238,260	+				+0.3
1,238,260	+				+0.3
1,238,260	+				+1.0
1,238,261	-				-0.5
1,238,261	-				-0.1
1,238,261	-				-0.3
1,238,261	-				-1.1
1,238,279	+				+0.1
1,238,280	-				+0.2
1,238,324	+				+0.3
1,238,324	+				+0.1
1,238,325	-				-0.0
1,238,325	-				+0.2
1,238,325	-				-0.3
1,238,345	+				+0.5
1,238,346	-				-0.3
1,238,346	-				+1.2
1,238,411	+				-0.8
1,238,412	-				-0.1
1,238,412	-				+0.3
1,238,449	+				+0.8
1,238,450	-				+0.7
1,238,450	-				+0.5
1,238,487	+				+0.3
1,238,488	-				+0.6
1,238,488	-				-0.2
1,238,488	-				-0.0
1,238,600	+				-0.2
1,238,600	+				-0.5
1,238,600	+				-1.3
1,238,600	+				+0.2
1,238,600	+				+0.1
1,238,601	-				-0.1
1,238,601	-				-0.2
1,238,601	-				+0.2
1,238,601	-				-0.0
1,238,601	-				-0.1
1,238,601	-				+0.4
1,238,601	-				+0.1
1,238,601	-				-0.3
1,238,601	-				+0.0
1,238,601	-				+0.2
1,238,652	+				+0.1
1,238,652	+				-0.3
1,238,652	+				+0.4
1,238,652	+				-0.2
1,238,652	+				-0.3
1,238,652	+				-0.3
1,238,652	+				-0.7
1,238,653	-				-0.2
1,238,653	-				+1.0
1,238,653	-				-0.0
1,238,653	-				-0.6
1,238,653	-				-0.4
1,238,653	-				+0.2
1,238,653	-				-0.6
1,238,653	-				-0.2
1,238,667	-				+0.1
1,238,678	+				-0.3
1,238,678	+				-0.3
1,238,678	+				-0.8
1,238,679	-		GFF2344	0.10	+0.2
1,238,679	-		GFF2344	0.10	-1.1
1,238,679	-		GFF2344	0.10	+0.5
1,238,679	-		GFF2344	0.10	+0.5
1,238,691	+		GFF2344	0.11	+2.2
1,238,691	+		GFF2344	0.11	-0.2
1,238,692	-		GFF2344	0.11	+0.6
1,238,692	-		GFF2344	0.11	+0.2
1,238,692	-		GFF2344	0.11	-0.4
1,238,766	+		GFF2344	0.14	+0.3
1,238,766	+		GFF2344	0.14	-0.2
1,238,767	-		GFF2344	0.14	+0.3
1,238,767	-		GFF2344	0.14	-0.3
1,238,767	-		GFF2344	0.14	-0.0
1,238,767	-		GFF2344	0.14	+0.1
1,238,784	+		GFF2344	0.15	+0.2
1,238,784	+		GFF2344	0.15	-0.6
1,238,785	-		GFF2344	0.15	+0.1
1,238,884	+		GFF2344	0.19	-0.2
1,238,884	+		GFF2344	0.19	-1.1
1,238,884	+		GFF2344	0.19	-1.1
1,238,884	+		GFF2344	0.19	-0.5
1,238,884	+		GFF2344	0.19	+1.1
1,238,884	+		GFF2344	0.19	-0.6
1,238,885	-		GFF2344	0.19	-0.6
1,238,885	-		GFF2344	0.19	-0.3
1,238,885	-		GFF2344	0.19	-0.2
1,238,885	-		GFF2344	0.19	-0.3
1,238,885	-		GFF2344	0.19	+0.2
1,238,885	-		GFF2344	0.19	+0.2
1,238,885	-		GFF2344	0.19	-0.8
1,238,885	-		GFF2344	0.19	+0.4
1,238,885	-		GFF2344	0.19	+0.2
1,238,885	-		GFF2344	0.19	+0.5
1,238,885	-		GFF2344	0.19	+0.1
1,238,885	-		GFF2344	0.19	+0.4
1,238,974	+		GFF2344	0.23	-0.9
1,238,974	+		GFF2344	0.23	-1.3
1,238,974	+		GFF2344	0.23	-0.3
1,238,974	+		GFF2344	0.23	-0.2
1,238,974	+		GFF2344	0.23	+0.2
1,238,974	+		GFF2344	0.23	+0.1
1,238,974	+		GFF2344	0.23	-0.1
1,238,974	+		GFF2344	0.23	+0.2
1,238,975	-		GFF2344	0.23	-1.1
1,238,975	-		GFF2344	0.23	+0.0
1,238,975	-		GFF2344	0.23	+0.1
1,238,975	-		GFF2344	0.23	-0.1
1,238,975	-		GFF2344	0.23	-2.3
1,238,999	+		GFF2344	0.24	-0.0
1,239,016	+		GFF2344	0.25	+0.3
1,239,016	+		GFF2344	0.25	+0.2
1,239,016	+		GFF2344	0.25	-1.1
1,239,016	+		GFF2344	0.25	+0.2
1,239,017	-		GFF2344	0.25	-0.1
1,239,017	-		GFF2344	0.25	-0.1
1,239,017	-		GFF2344	0.25	+0.5
1,239,039	+		GFF2344	0.26	-0.7
1,239,040	-		GFF2344	0.26	-0.1
1,239,177	+		GFF2344	0.32	-0.0
1,239,178	-		GFF2344	0.32	+0.2
1,239,178	-		GFF2344	0.32	-0.6
1,239,223	+		GFF2344	0.34	+0.5
1,239,223	+		GFF2344	0.34	-0.3
1,239,223	+		GFF2344	0.34	-0.4
1,239,223	+		GFF2344	0.34	-0.9
1,239,250	+		GFF2344	0.35	-0.0
1,239,250	+		GFF2344	0.35	+0.3
1,239,251	-		GFF2344	0.35	+0.7
1,239,251	-		GFF2344	0.35	-0.1
1,239,251	-		GFF2344	0.35	-0.4
1,239,322	+		GFF2344	0.38	-0.3
1,239,322	+		GFF2344	0.38	-0.3
1,239,322	+		GFF2344	0.38	+0.5
1,239,323	-		GFF2344	0.38	-0.1
1,239,323	-		GFF2344	0.38	+0.0
1,239,327	+		GFF2344	0.39	-0.7
1,239,457	+		GFF2344	0.44	-0.8
1,239,457	+		GFF2344	0.44	-1.2
1,239,457	+		GFF2344	0.44	+0.2
1,239,458	-		GFF2344	0.44	+0.4
1,239,458	-		GFF2344	0.44	-0.3
1,239,458	-		GFF2344	0.44	+1.1
1,239,527	+		GFF2344	0.47	-0.2
1,239,527	+		GFF2344	0.47	-0.2
1,239,527	+		GFF2344	0.47	-2.5
1,239,528	-		GFF2344	0.47	-0.7
1,239,674	+		GFF2344	0.54	+0.4
1,239,675	-		GFF2344	0.54	-0.4
1,239,691	+		GFF2344	0.55	-0.1
1,239,691	+		GFF2344	0.55	-0.1
1,239,691	+		GFF2344	0.55	-0.1
1,239,691	+		GFF2344	0.55	-0.6
1,239,691	+		GFF2344	0.55	-0.3
1,239,691	+		GFF2344	0.55	+0.1
1,239,691	+		GFF2344	0.55	+0.1
1,239,691	+		GFF2344	0.55	+0.0
1,239,692	-		GFF2344	0.55	-0.5
1,239,692	-		GFF2344	0.55	+0.2
1,239,692	-		GFF2344	0.55	+1.2
1,239,927	+		GFF2344	0.65	-0.3
1,239,927	+		GFF2344	0.65	-0.3
1,239,927	+		GFF2344	0.65	-0.5
1,239,927	+		GFF2344	0.65	+0.9
1,239,927	+		GFF2344	0.65	-0.3
1,239,927	+		GFF2344	0.65	+0.7
1,239,927	+		GFF2344	0.65	-0.2
1,239,927	+		GFF2344	0.65	+0.2
1,239,927	+		GFF2344	0.65	+0.3
1,239,927	+		GFF2344	0.65	+0.5
1,239,927	+		GFF2344	0.65	-0.2
1,239,927	+		GFF2344	0.65	-0.3
1,239,927	+		GFF2344	0.65	+0.1
1,239,928	-		GFF2344	0.65	+0.3
1,239,928	-		GFF2344	0.65	-0.7
1,239,928	-		GFF2344	0.65	+0.0
1,239,928	-		GFF2344	0.65	-0.0
1,239,928	-		GFF2344	0.65	-0.3
1,239,928	-		GFF2344	0.65	-0.8
1,239,928	-		GFF2344	0.65	+0.8
1,239,928	-		GFF2344	0.65	-0.7
1,239,976	+		GFF2344	0.67	+0.0
1,239,976	+		GFF2344	0.67	+0.1
1,239,976	+		GFF2344	0.67	+0.2
1,239,976	+		GFF2344	0.67	+0.1
1,239,977	-		GFF2344	0.67	+0.8
1,239,977	-		GFF2344	0.67	+0.2
1,239,977	-		GFF2344	0.67	-0.2
1,239,977	-		GFF2344	0.67	-0.0
1,239,998	+		GFF2344	0.68	-0.4
1,239,998	+		GFF2344	0.68	+0.5
1,239,998	+		GFF2344	0.68	-0.0
1,239,999	-		GFF2344	0.68	-0.6
1,239,999	-		GFF2344	0.68	-0.5
1,239,999	-		GFF2344	0.68	-0.5
1,239,999	-		GFF2344	0.68	+1.2
1,240,125	+		GFF2344	0.74	-0.1
1,240,125	+		GFF2344	0.74	+0.3
1,240,125	+		GFF2344	0.74	+0.4
1,240,126	-		GFF2344	0.74	-1.1
1,240,134	+		GFF2344	0.74	+0.7
1,240,134	+		GFF2344	0.74	+1.2
1,240,135	-		GFF2344	0.74	+1.6
1,240,135	-		GFF2344	0.74	-0.3
1,240,173	+		GFF2344	0.76	-0.2
1,240,173	+		GFF2344	0.76	-1.8
1,240,174	-		GFF2344	0.76	-0.3
1,240,182	+		GFF2344	0.76	-0.7
1,240,182	+		GFF2344	0.76	-0.2
1,240,183	-		GFF2344	0.76	+0.3
1,240,207	+		GFF2344	0.77	-0.1
1,240,208	-		GFF2344	0.77	-0.6
1,240,233	-		GFF2344	0.78	+1.6
1,240,239	+		GFF2344	0.79	-0.1
1,240,239	+		GFF2344	0.79	+0.8
1,240,240	-		GFF2344	0.79	+0.1
1,240,240	-		GFF2344	0.79	-0.2
1,240,240	-		GFF2344	0.79	+0.8
1,240,240	-		GFF2344	0.79	+0.4
1,240,240	-		GFF2344	0.79	+0.1
1,240,240	-		GFF2344	0.79	-0.4
1,240,240	-		GFF2344	0.79	-0.3
1,240,272	+		GFF2344	0.80	-0.6
1,240,273	-		GFF2344	0.80	+0.0
1,240,273	-		GFF2344	0.80	-0.4
1,240,293	+		GFF2344	0.81	+0.2
1,240,293	+		GFF2344	0.81	-0.9
1,240,321	+		GFF2344	0.82	+0.9
1,240,321	+		GFF2344	0.82	-0.0
1,240,322	-		GFF2344	0.82	+0.2
1,240,322	-		GFF2344	0.82	+0.2
1,240,328	-		GFF2344	0.83	+0.4
1,240,337	-		GFF2344	0.83	-0.8
1,240,337	-		GFF2344	0.83	-0.2
1,240,337	-		GFF2344	0.83	-1.7
1,240,337	-		GFF2344	0.83	-0.3
1,240,360	+		GFF2344	0.84	+0.6
1,240,360	+		GFF2344	0.84	+0.8
1,240,361	-		GFF2344	0.84	+0.8
1,240,361	-		GFF2344	0.84	-1.2
1,240,517	+				+0.9
1,240,542	+				-0.2
1,240,542	+				-0.5
1,240,542	+				+0.0
1,240,542	+				-0.3
1,240,542	+				+0.2
1,240,542	+				+0.2
1,240,543	-				-0.6
1,240,543	-				+0.3
1,240,543	-				-0.3
1,240,543	-				+0.0
1,240,543	-				+0.2
1,240,543	-				-0.4
1,240,543	-				-0.1
1,240,543	-				-0.2
1,240,548	+				-0.0
1,240,549	-				-0.6
1,240,699	+				-0.7
1,240,699	+				-1.3
1,240,699	+				+1.2
1,240,700	-				-0.3
1,240,707	+				+0.0
1,240,707	+				+0.2
1,240,707	+				-0.3
1,240,707	+				-0.4
1,240,708	-				+0.1
1,240,708	-				+0.0
1,240,708	-				+0.2
1,240,708	-				-0.3
1,240,722	+				-1.0
1,240,722	+				-0.3
1,240,822	+				-0.7
1,240,822	+				+2.6
1,240,822	+				+0.6
1,240,823	-				-0.4
1,240,823	-				+1.2
1,240,823	-				+0.8
1,240,901	+				-1.3
1,240,902	-				+0.1
1,240,902	-				-0.6
1,240,911	-				-0.1
1,241,076	+				+0.1
1,241,076	+				-0.6
1,241,076	+				+0.2
1,241,076	+				+0.2
1,241,076	+				-0.6
1,241,077	-				-0.1
1,241,077	-				+0.8
1,241,077	-				+0.2
1,241,077	-				-1.6
1,241,132	+				-0.3
1,241,191	+				-0.8
1,241,191	+				+0.1
1,241,192	-				-0.2
1,241,192	-				-0.1
1,241,267	+				-0.1
1,241,267	+				+0.0
1,241,267	+				-0.0
1,241,267	+				-0.0
1,241,267	+				-0.0
1,241,267	+				+0.3
1,241,267	+				-0.3
1,241,267	+				-0.2
1,241,268	-				-0.3
1,241,268	-				-0.3
1,241,268	-				-0.1
1,241,268	-				-1.8
1,241,268	-				+0.3
1,241,268	-				-0.2
1,241,268	-				+1.7
1,241,268	-				+0.3
1,241,268	-				+0.6
1,241,287	+				-0.8
1,241,287	+				+1.5
1,241,288	-				-0.0
1,241,296	+				+0.0
1,241,408	-				+0.1
1,241,482	+				+0.5
1,241,482	+				-0.6
1,241,500	+				-0.2
1,241,500	+				+0.2
1,241,500	+				-0.3
1,241,501	-				+0.1
1,241,501	-				-0.2
1,241,501	-				-1.5
1,241,510	+				-0.3
1,241,511	-				-1.1
1,241,511	-				+0.4
1,241,580	-				-0.1
1,241,580	-				+0.1
1,241,580	-				-0.3
1,241,680	+				-0.2
1,241,680	+				-0.4
1,241,680	+				-0.3
1,241,681	-				+0.4
1,241,681	-				-2.2
1,241,681	-				-0.6