Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2298

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
1,182,981	+		GFF2297	0.39	-0.3
1,182,982	-		GFF2297	0.39	+0.0
1,183,161	+		GFF2297	0.51	+1.0
1,183,161	+		GFF2297	0.51	-0.7
1,183,162	-		GFF2297	0.51	-0.6
1,183,350	+		GFF2297	0.63	-0.1
1,183,350	+		GFF2297	0.63	+0.4
1,183,350	+		GFF2297	0.63	-0.0
1,183,351	-		GFF2297	0.63	-0.3
1,183,351	-		GFF2297	0.63	+0.4
1,183,497	+		GFF2297	0.73	-0.6
1,183,498	-		GFF2297	0.73	+1.9
1,183,498	-		GFF2297	0.73	+0.5
1,183,498	-		GFF2297	0.73	-0.2
1,183,498	-		GFF2297	0.73	+0.0
1,183,498	-		GFF2297	0.73	-0.4
1,183,878	+				-0.2
1,183,879	-				-0.2
1,184,189	+		GFF2298	0.29	-0.2
1,184,318	+		GFF2298	0.44	-0.0
1,184,319	-		GFF2298	0.44	+0.1
1,184,319	-		GFF2298	0.44	+0.4
1,184,624	+		GFF2298	0.80	-0.1
1,184,624	+		GFF2298	0.80	-0.6
1,184,893	+		GFF2299	0.25	-1.2
1,184,893	+		GFF2299	0.25	-0.1
1,184,894	-		GFF2299	0.25	-0.5
1,184,894	-		GFF2299	0.25	-0.1
1,184,894	-		GFF2299	0.25	-1.8
1,185,471	+		GFF2300	0.19	-0.2
1,185,493	-		GFF2300	0.21	-0.2
1,185,766	-		GFF2300	0.43	+0.0
1,185,766	-		GFF2300	0.43	-0.2