Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2280

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
1,165,075	+				-0.4
1,165,076	-				-0.7
1,165,305	+		GFF2279	0.24	+0.3
1,165,323	+		GFF2279	0.27	-0.4
1,165,323	+		GFF2279	0.27	-1.1
1,165,323	+		GFF2279	0.27	-0.4
1,165,324	-		GFF2279	0.27	+1.0
1,165,405	-		GFF2279	0.36	-0.2
1,165,444	-		GFF2279	0.40	+0.0
1,165,444	-		GFF2279	0.40	+0.0
1,165,449	+		GFF2279	0.41	+0.0
1,165,449	+		GFF2279	0.41	+0.3
1,165,449	+		GFF2279	0.41	-0.0
1,165,450	-		GFF2279	0.41	-0.3
1,165,450	-		GFF2279	0.41	+0.3
1,165,450	-		GFF2279	0.41	+0.1
1,165,450	-		GFF2279	0.41	+0.5
1,165,450	-		GFF2279	0.41	+0.3
1,165,450	-		GFF2279	0.41	+0.2
1,165,450	-		GFF2279	0.41	+0.2
1,165,450	-		GFF2279	0.41	+1.2
1,165,578	+		GFF2279	0.56	+0.4
1,165,578	+		GFF2279	0.56	+0.3
1,165,578	+		GFF2279	0.56	+0.3
1,165,596	+		GFF2279	0.58	+0.3
1,165,596	+		GFF2279	0.58	-0.1
1,165,597	-		GFF2279	0.58	+0.3
1,165,597	-		GFF2279	0.58	-0.0
1,165,597	-		GFF2279	0.58	-1.1
1,165,752	+		GFF2279	0.76	-0.6
1,165,753	-		GFF2279	0.76	-0.8
1,165,842	+		GFF2279	0.86	+0.9
1,165,950	+				-0.0
1,165,951	-				-0.2
1,166,039	+				+1.2
1,166,039	+				-2.1
1,166,039	+				+0.2
1,166,039	+				-0.2
1,166,039	+				+0.0
1,166,039	+				+0.1
1,166,040	-				-0.7
1,166,040	-				+0.2
1,166,040	-				+0.3
1,166,040	-				-0.2
1,166,040	-				+0.4
1,166,040	-				-0.1
1,166,040	-				+0.1
1,166,129	+		GFF2280	0.23	+0.2
1,166,130	-		GFF2280	0.23	-0.3
1,166,130	-		GFF2280	0.23	-1.3
1,166,162	+		GFF2280	0.31	-0.3
1,166,162	+		GFF2280	0.31	-0.2
1,166,162	+		GFF2280	0.31	-2.3
1,166,163	-		GFF2280	0.31	+0.4
1,166,163	-		GFF2280	0.31	+0.7
1,166,163	-		GFF2280	0.31	-0.1
1,166,273	+		GFF2280	0.58	-0.5
1,166,273	+		GFF2280	0.58	-0.2
1,166,273	+		GFF2280	0.58	-0.4
1,166,273	+		GFF2280	0.58	-0.0
1,166,274	-		GFF2280	0.58	-0.3
1,166,274	-		GFF2280	0.58	+0.2
1,166,274	-		GFF2280	0.58	+0.2
1,166,331	-		GFF2280	0.72	+0.4
1,166,331	-		GFF2280	0.72	+1.2
1,166,331	-		GFF2280	0.72	-0.6
1,166,789	-		GFF2281	0.22	+0.9
1,166,789	-		GFF2281	0.22	+0.3
1,166,920	+		GFF2281	0.33	-1.1
1,167,052	+		GFF2281	0.43	+0.0
1,167,053	-		GFF2281	0.43	+0.7
1,167,053	-		GFF2281	0.43	-0.2
1,167,053	-		GFF2281	0.43	+0.5
1,167,328	+		GFF2281	0.65	+0.0
1,167,328	+		GFF2281	0.65	-0.0
1,167,328	+		GFF2281	0.65	-0.1
1,167,328	+		GFF2281	0.65	+0.2
1,167,329	-		GFF2281	0.65	-0.3
1,167,398	-		GFF2281	0.70	-0.6
1,167,398	-		GFF2281	0.70	-0.9
1,167,409	+		GFF2281	0.71	+1.0