Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2008 and GFF2009 are separated by 584 nucleotides GFF2009 and GFF2010 overlap by 17 nucleotides GFF2010 and GFF2011 are separated by 304 nucleotides
GFF2008 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 881,784 to 883,208
GFF2008
GFF2009 - Sensor histidine kinase, at 883,793 to 885,670
GFF2009
GFF2010 - DNA-binding response regulator, LuxR family, at 885,654 to 886,274
GFF2010
GFF2011 - glycoprotein/polysaccharide metabolism, at 886,579 to 887,388
GFF2011
Position (kb) 883
884
885
886 Strain fitness (log2 ratio) -2
-1
0
1 at 882.798 kb on + strand, within GFF2008 at 882.798 kb on + strand, within GFF2008 at 882.798 kb on + strand, within GFF2008 at 882.799 kb on - strand, within GFF2008 at 882.799 kb on - strand, within GFF2008 at 882.924 kb on + strand, within GFF2008 at 882.924 kb on + strand, within GFF2008 at 882.924 kb on + strand, within GFF2008 at 883.205 kb on - strand at 883.206 kb on + strand at 883.206 kb on + strand at 883.206 kb on + strand at 883.206 kb on + strand at 883.207 kb on - strand at 883.207 kb on - strand at 883.207 kb on - strand at 883.207 kb on - strand at 883.207 kb on - strand at 883.207 kb on - strand at 883.350 kb on + strand at 883.350 kb on + strand at 883.350 kb on + strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.352 kb on + strand at 883.352 kb on + strand at 883.352 kb on + strand at 883.352 kb on + strand at 883.352 kb on + strand at 883.352 kb on + strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.377 kb on + strand at 883.378 kb on - strand at 883.496 kb on + strand at 883.497 kb on - strand at 883.521 kb on + strand at 883.521 kb on + strand at 883.521 kb on + strand at 883.522 kb on - strand at 883.522 kb on - strand at 883.522 kb on - strand at 883.522 kb on - strand at 883.522 kb on - strand at 883.522 kb on - strand at 883.523 kb on + strand at 883.523 kb on + strand at 883.523 kb on + strand at 883.523 kb on + strand at 883.523 kb on + strand at 883.524 kb on - strand at 883.524 kb on - strand at 883.524 kb on - strand at 883.524 kb on - strand at 883.525 kb on - strand at 883.529 kb on - strand at 883.544 kb on + strand at 883.544 kb on + strand at 883.544 kb on + strand at 883.544 kb on + strand at 883.545 kb on - strand at 883.545 kb on - strand at 883.545 kb on - strand at 883.545 kb on - strand at 883.545 kb on - strand at 883.653 kb on - strand at 883.689 kb on + strand at 883.702 kb on + strand at 883.702 kb on + strand at 883.702 kb on + strand at 883.703 kb on - strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.715 kb on + strand at 883.715 kb on + strand at 883.715 kb on + strand at 883.715 kb on + strand at 883.715 kb on + strand at 883.715 kb on + strand at 883.716 kb on - strand at 883.716 kb on - strand at 883.716 kb on - strand at 883.716 kb on - strand at 883.716 kb on - strand at 883.716 kb on - strand at 883.720 kb on - strand at 883.720 kb on - strand at 883.763 kb on + strand at 883.763 kb on + strand at 883.763 kb on + strand at 883.763 kb on + strand at 883.764 kb on - strand at 883.764 kb on - strand at 883.764 kb on - strand at 883.899 kb on + strand at 883.899 kb on + strand at 883.899 kb on + strand at 883.899 kb on + strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 884.076 kb on + strand, within GFF2009 at 884.076 kb on + strand, within GFF2009 at 884.160 kb on + strand, within GFF2009 at 884.161 kb on - strand, within GFF2009 at 884.385 kb on + strand, within GFF2009 at 884.385 kb on + strand, within GFF2009 at 884.385 kb on + strand, within GFF2009 at 884.385 kb on + strand, within GFF2009 at 884.385 kb on + strand, within GFF2009 at 884.386 kb on - strand, within GFF2009 at 884.386 kb on - strand, within GFF2009 at 884.386 kb on - strand, within GFF2009 at 884.386 kb on - strand, within GFF2009 at 884.436 kb on + strand, within GFF2009 at 884.436 kb on + strand, within GFF2009 at 884.437 kb on - strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.607 kb on + strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.608 kb on - strand, within GFF2009 at 884.628 kb on + strand, within GFF2009 at 884.628 kb on + strand, within GFF2009 at 884.628 kb on + strand, within GFF2009 at 884.629 kb on - strand, within GFF2009 at 884.629 kb on - strand, within GFF2009 at 884.629 kb on - strand, within GFF2009 at 884.629 kb on - strand, within GFF2009 at 884.700 kb on + strand, within GFF2009 at 884.700 kb on + strand, within GFF2009 at 884.700 kb on + strand, within GFF2009 at 884.700 kb on + strand, within GFF2009 at 884.700 kb on + strand, within GFF2009 at 884.700 kb on + strand, within GFF2009 at 884.700 kb on + strand, within GFF2009 at 884.700 kb on + strand, within GFF2009 at 884.701 kb on - strand, within GFF2009 at 884.701 kb on - strand, within GFF2009 at 884.701 kb on - strand, within GFF2009 at 884.701 kb on - strand, within GFF2009 at 884.701 kb on - strand, within GFF2009 at 884.719 kb on - strand, within GFF2009 at 884.719 kb on - strand, within GFF2009 at 884.719 kb on - strand, within GFF2009 at 884.719 kb on - strand, within GFF2009 at 884.900 kb on + strand, within GFF2009 at 884.902 kb on - strand, within GFF2009 at 884.902 kb on - strand, within GFF2009 at 884.902 kb on - strand, within GFF2009 at 884.902 kb on - strand, within GFF2009 at 885.063 kb on + strand, within GFF2009 at 885.063 kb on + strand, within GFF2009 at 885.063 kb on + strand, within GFF2009 at 885.064 kb on - strand, within GFF2009 at 885.064 kb on - strand, within GFF2009 at 885.064 kb on - strand, within GFF2009 at 885.064 kb on - strand, within GFF2009 at 885.180 kb on + strand, within GFF2009 at 885.180 kb on + strand, within GFF2009 at 885.180 kb on + strand, within GFF2009 at 885.180 kb on + strand, within GFF2009 at 885.181 kb on - strand, within GFF2009 at 885.181 kb on - strand, within GFF2009 at 885.181 kb on - strand, within GFF2009 at 885.181 kb on - strand, within GFF2009 at 885.181 kb on - strand, within GFF2009 at 885.193 kb on + strand, within GFF2009 at 885.246 kb on + strand, within GFF2009 at 885.363 kb on + strand, within GFF2009 at 885.363 kb on + strand, within GFF2009 at 885.363 kb on + strand, within GFF2009 at 885.364 kb on - strand, within GFF2009 at 885.364 kb on - strand, within GFF2009 at 885.364 kb on - strand, within GFF2009 at 885.364 kb on - strand, within GFF2009 at 885.364 kb on - strand, within GFF2009 at 885.364 kb on - strand, within GFF2009 at 885.364 kb on - strand, within GFF2009 at 885.364 kb on - strand, within GFF2009 at 885.423 kb on + strand, within GFF2009 at 885.423 kb on + strand, within GFF2009 at 885.655 kb on + strand at 885.656 kb on - strand at 885.691 kb on + strand at 885.691 kb on + strand at 885.691 kb on + strand at 885.691 kb on + strand at 885.691 kb on + strand at 885.691 kb on + strand at 885.692 kb on - strand at 885.692 kb on - strand at 885.692 kb on - strand at 885.692 kb on - strand at 886.318 kb on + strand at 886.318 kb on + strand at 886.319 kb on - strand at 886.319 kb on - strand at 886.391 kb on + strand at 886.391 kb on + strand at 886.392 kb on - strand at 886.445 kb on + strand at 886.445 kb on + strand at 886.446 kb on - strand at 886.446 kb on - strand at 886.446 kb on - strand at 886.446 kb on - strand at 886.446 kb on - strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 882,798 + GFF2008 0.71 -0.3 882,798 + GFF2008 0.71 -0.3 882,798 + GFF2008 0.71 -0.0 882,799 - GFF2008 0.71 +0.2 882,799 - GFF2008 0.71 -0.1 882,924 + GFF2008 0.80 +0.2 882,924 + GFF2008 0.80 -0.3 882,924 + GFF2008 0.80 -0.2 883,205 - +0.5 883,206 + -0.2 883,206 + +0.5 883,206 + -0.3 883,206 + +0.2 883,207 - -0.4 883,207 - +1.5 883,207 - +0.9 883,207 - -0.2 883,207 - -0.3 883,207 - -0.2 883,350 + +0.5 883,350 + +0.3 883,350 + -0.1 883,351 - -0.1 883,351 - -1.3 883,351 - -0.3 883,351 - +0.5 883,351 - -0.6 883,352 + -0.4 883,352 + -0.2 883,352 + +0.8 883,352 + -0.5 883,352 + -1.3 883,352 + +0.4 883,353 - -0.3 883,353 - -0.2 883,353 - -0.1 883,353 - +0.6 883,353 - +0.0 883,353 - -1.0 883,353 - +0.5 883,353 - -0.2 883,353 - +0.1 883,353 - +0.1 883,353 - -0.0 883,353 - -0.1 883,353 - -0.2 883,353 - -0.1 883,353 - +0.2 883,353 - -0.8 883,377 + -0.5 883,378 - -0.5 883,496 + +0.5 883,497 - -0.6 883,521 + +0.1 883,521 + +0.7 883,521 + -0.5 883,522 - -0.2 883,522 - -0.3 883,522 - -0.4 883,522 - -1.5 883,522 - +0.7 883,522 - -0.2 883,523 + -0.1 883,523 + -1.1 883,523 + -0.1 883,523 + +0.8 883,523 + +1.2 883,524 - -0.3 883,524 - +0.7 883,524 - -1.9 883,524 - -0.3 883,525 - -0.2 883,529 - +0.4 883,544 + -0.7 883,544 + -0.2 883,544 + +0.1 883,544 + -0.3 883,545 - -1.3 883,545 - +0.2 883,545 - -0.1 883,545 - -0.6 883,545 - +0.9 883,653 - -0.2 883,689 + -0.8 883,702 + +0.6 883,702 + +0.6 883,702 + -0.3 883,703 - -0.4 883,706 + -0.2 883,706 + +0.9 883,706 + +0.2 883,706 + -0.1 883,706 + +0.5 883,706 + -0.5 883,706 + -0.2 883,706 + -1.3 883,706 + -0.3 883,706 + +0.1 883,706 + +0.7 883,706 + +0.2 883,706 + -0.1 883,706 + -0.6 883,706 + +0.0 883,706 + -0.2 883,706 + -0.1 883,707 - -0.1 883,707 - +0.1 883,707 - +0.0 883,707 - +0.2 883,707 - +0.3 883,707 - +0.2 883,715 + +0.0 883,715 + -0.5 883,715 + +0.4 883,715 + -0.6 883,715 + -0.6 883,715 + +0.6 883,716 - -0.0 883,716 - -0.6 883,716 - +0.3 883,716 - -0.2 883,716 - -0.9 883,716 - -0.3 883,720 - -0.2 883,720 - -0.3 883,763 + +0.2 883,763 + +0.1 883,763 + -0.8 883,763 + +0.1 883,764 - +1.2 883,764 - +0.4 883,764 - -0.0 883,899 + -0.2 883,899 + -0.6 883,899 + +0.5 883,899 + +0.6 883,900 - -0.6 883,900 - -0.4 883,900 - +0.0 883,900 - +0.4 883,900 - -0.5 883,900 - +0.1 883,900 - -0.3 883,900 - -0.0 883,900 - -0.5 884,076 + GFF2009 0.15 +0.1 884,076 + GFF2009 0.15 +0.4 884,160 + GFF2009 0.20 -1.8 884,161 - GFF2009 0.20 +0.9 884,385 + GFF2009 0.32 +0.3 884,385 + GFF2009 0.32 -0.8 884,385 + GFF2009 0.32 -0.5 884,385 + GFF2009 0.32 -0.0 884,385 + GFF2009 0.32 -0.3 884,386 - GFF2009 0.32 -0.2 884,386 - GFF2009 0.32 +0.2 884,386 - GFF2009 0.32 -0.2 884,386 - GFF2009 0.32 -1.9 884,436 + GFF2009 0.34 -0.2 884,436 + GFF2009 0.34 +0.4 884,437 - GFF2009 0.34 -0.8 884,607 + GFF2009 0.43 -0.1 884,607 + GFF2009 0.43 +0.0 884,607 + GFF2009 0.43 -0.0 884,607 + GFF2009 0.43 +0.6 884,607 + GFF2009 0.43 -0.6 884,607 + GFF2009 0.43 +0.2 884,607 + GFF2009 0.43 +0.5 884,607 + GFF2009 0.43 +1.2 884,607 + GFF2009 0.43 -0.7 884,607 + GFF2009 0.43 -0.7 884,607 + GFF2009 0.43 -0.5 884,607 + GFF2009 0.43 +1.2 884,607 + GFF2009 0.43 +0.1 884,607 + GFF2009 0.43 +0.2 884,607 + GFF2009 0.43 +0.3 884,607 + GFF2009 0.43 -0.7 884,607 + GFF2009 0.43 +0.0 884,607 + GFF2009 0.43 +0.8 884,608 - GFF2009 0.43 -0.1 884,608 - GFF2009 0.43 -0.8 884,608 - GFF2009 0.43 +0.0 884,608 - GFF2009 0.43 -0.3 884,608 - GFF2009 0.43 +0.1 884,608 - GFF2009 0.43 -0.6 884,608 - GFF2009 0.43 -0.2 884,608 - GFF2009 0.43 -0.3 884,608 - GFF2009 0.43 -0.0 884,608 - GFF2009 0.43 +0.0 884,608 - GFF2009 0.43 +0.0 884,608 - GFF2009 0.43 +1.4 884,608 - GFF2009 0.43 +0.4 884,608 - GFF2009 0.43 +0.3 884,608 - GFF2009 0.43 -0.0 884,608 - GFF2009 0.43 +0.0 884,608 - GFF2009 0.43 +0.2 884,608 - GFF2009 0.43 +0.6 884,608 - GFF2009 0.43 -0.2 884,628 + GFF2009 0.44 +0.1 884,628 + GFF2009 0.44 -0.3 884,628 + GFF2009 0.44 +0.1 884,629 - GFF2009 0.45 -0.9 884,629 - GFF2009 0.45 +0.2 884,629 - GFF2009 0.45 -0.0 884,629 - GFF2009 0.45 +0.1 884,700 + GFF2009 0.48 -0.2 884,700 + GFF2009 0.48 +0.0 884,700 + GFF2009 0.48 -0.4 884,700 + GFF2009 0.48 -0.3 884,700 + GFF2009 0.48 -0.0 884,700 + GFF2009 0.48 -0.1 884,700 + GFF2009 0.48 -1.3 884,700 + GFF2009 0.48 +0.0 884,701 - GFF2009 0.48 -0.2 884,701 - GFF2009 0.48 -0.2 884,701 - GFF2009 0.48 +0.2 884,701 - GFF2009 0.48 +0.1 884,701 - GFF2009 0.48 +0.7 884,719 - GFF2009 0.49 -0.3 884,719 - GFF2009 0.49 +0.7 884,719 - GFF2009 0.49 -0.5 884,719 - GFF2009 0.49 -0.2 884,900 + GFF2009 0.59 +1.0 884,902 - GFF2009 0.59 -0.1 884,902 - GFF2009 0.59 -1.8 884,902 - GFF2009 0.59 -0.5 884,902 - GFF2009 0.59 -0.3 885,063 + GFF2009 0.68 -1.6 885,063 + GFF2009 0.68 +0.4 885,063 + GFF2009 0.68 -2.1 885,064 - GFF2009 0.68 -0.3 885,064 - GFF2009 0.68 -0.3 885,064 - GFF2009 0.68 -0.3 885,064 - GFF2009 0.68 -0.2 885,180 + GFF2009 0.74 +0.6 885,180 + GFF2009 0.74 -0.4 885,180 + GFF2009 0.74 -0.3 885,180 + GFF2009 0.74 -0.2 885,181 - GFF2009 0.74 -0.1 885,181 - GFF2009 0.74 +0.2 885,181 - GFF2009 0.74 -0.1 885,181 - GFF2009 0.74 +0.1 885,181 - GFF2009 0.74 -0.2 885,193 + GFF2009 0.75 +0.9 885,246 + GFF2009 0.77 +0.1 885,363 + GFF2009 0.84 -0.3 885,363 + GFF2009 0.84 -0.3 885,363 + GFF2009 0.84 +0.1 885,364 - GFF2009 0.84 -1.3 885,364 - GFF2009 0.84 +0.1 885,364 - GFF2009 0.84 +0.0 885,364 - GFF2009 0.84 -0.2 885,364 - GFF2009 0.84 +0.5 885,364 - GFF2009 0.84 -0.6 885,364 - GFF2009 0.84 +0.2 885,364 - GFF2009 0.84 -0.6 885,423 + GFF2009 0.87 +0.2 885,423 + GFF2009 0.87 -0.0 885,655 + -1.2 885,656 - -0.9 885,691 + +0.8 885,691 + +0.6 885,691 + +0.8 885,691 + -0.1 885,691 + +0.4 885,691 + +0.2 885,692 - +1.0 885,692 - -0.2 885,692 - -0.2 885,692 - -0.5 886,318 + +0.2 886,318 + +0.2 886,319 - -0.1 886,319 - +0.2 886,391 + +0.0 886,391 + -1.0 886,392 - +0.5 886,445 + -0.3 886,445 + -0.2 886,446 - +0.1 886,446 - -0.2 886,446 - -0.1 886,446 - -0.8 886,446 - -0.5 886,510 + -0.1 886,510 + -0.8 886,510 + +0.6 886,510 + -0.8 886,510 + -0.1 886,510 + -0.1 886,510 + -0.3 886,510 + +0.1 886,510 + -0.1 886,510 + -1.1 886,510 + -0.2 886,511 - +0.4 886,511 - -0.2 886,511 - +0.7 886,511 - +0.2 886,511 - -0.3 886,511 - -0.2 886,511 - +0.1 886,511 - -0.3 886,511 - -0.3 886,511 - +0.0 886,511 - +0.9 886,511 - +0.2 886,511 - -0.0 886,511 - -0.0 886,552 - +1.0
Or see this region's nucleotide sequence