Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1972

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1970 and GFF1971 are separated by 69 nucleotidesGFF1971 and GFF1972 are separated by 154 nucleotidesGFF1972 and GFF1973 are separated by 150 nucleotides GFF1970 - Universal stress family protein, at 843,900 to 844,322 GFF1970 GFF1971 - Transcriptional regulator, TetR family, at 844,392 to 844,976 GFF1971 GFF1972 - Transcriptional regulator, at 845,131 to 846,060 GFF1972 GFF1973 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 846,211 to 847,563 GFF1973 Position (kb) 845 846 847Strain fitness (log2 ratio) -2 -1 0 1at 844.456 kb on + strand, within GFF1971at 844.507 kb on + strand, within GFF1971at 844.508 kb on - strand, within GFF1971at 844.516 kb on + strand, within GFF1971at 844.516 kb on + strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 845.042 kb on + strandat 845.043 kb on - strandat 845.043 kb on - strandat 845.043 kb on - strandat 845.525 kb on + strand, within GFF1972at 845.525 kb on + strand, within GFF1972at 845.526 kb on - strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 846.108 kb on + strandat 846.109 kb on - strandat 846.109 kb on - strandat 846.163 kb on + strandat 846.163 kb on + strandat 846.163 kb on + strandat 846.163 kb on + strandat 846.164 kb on - strandat 846.164 kb on - strandat 846.164 kb on - strandat 846.164 kb on - strandat 846.173 kb on - strandat 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.361 kb on + strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.362 kb on - strand, within GFF1973at 846.410 kb on - strand, within GFF1973at 846.550 kb on + strand, within GFF1973at 846.551 kb on - strand, within GFF1973at 846.551 kb on - strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.598 kb on + strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.599 kb on - strand, within GFF1973at 846.628 kb on + strand, within GFF1973at 846.628 kb on + strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.629 kb on - strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.631 kb on + strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.632 kb on - strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.781 kb on + strand, within GFF1973at 846.782 kb on - strand, within GFF1973at 846.782 kb on - strand, within GFF1973at 846.994 kb on + strand, within GFF1973at 846.995 kb on - strand, within GFF1973at 847.039 kb on + strand, within GFF1973at 847.040 kb on - strand, within GFF1973at 847.054 kb on + strand, within GFF1973at 847.054 kb on + strand, within GFF1973at 847.055 kb on - strand, within GFF1973at 847.055 kb on - strand, within GFF1973at 847.055 kb on - strand, within GFF1973

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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844,456 + GFF1971 0.11 +0.1
844,507 + GFF1971 0.20 -0.0
844,508 - GFF1971 0.20 +0.4
844,516 + GFF1971 0.21 +1.0
844,516 + GFF1971 0.21 +0.0
844,517 - GFF1971 0.21 +0.5
844,517 - GFF1971 0.21 +0.1
844,517 - GFF1971 0.21 -0.0
844,517 - GFF1971 0.21 +1.3
844,621 + GFF1971 0.39 +0.2
844,621 + GFF1971 0.39 +0.4
844,621 + GFF1971 0.39 -1.0
844,621 + GFF1971 0.39 +0.9
844,621 + GFF1971 0.39 +1.5
844,621 + GFF1971 0.39 -0.1
844,621 + GFF1971 0.39 +0.4
844,621 + GFF1971 0.39 +1.2
844,622 - GFF1971 0.39 -0.7
844,622 - GFF1971 0.39 +0.5
844,622 - GFF1971 0.39 +0.6
844,622 - GFF1971 0.39 +0.7
844,622 - GFF1971 0.39 +1.5
844,852 + GFF1971 0.79 +0.4
844,852 + GFF1971 0.79 -0.1
844,852 + GFF1971 0.79 +0.4
844,852 + GFF1971 0.79 +0.4
844,852 + GFF1971 0.79 -0.0
844,852 + GFF1971 0.79 -0.7
844,852 + GFF1971 0.79 +0.4
844,852 + GFF1971 0.79 -0.5
844,853 - GFF1971 0.79 +0.3
844,853 - GFF1971 0.79 -1.5
844,853 - GFF1971 0.79 -0.5
844,853 - GFF1971 0.79 -1.1
844,853 - GFF1971 0.79 +0.2
844,853 - GFF1971 0.79 -0.4
844,853 - GFF1971 0.79 +0.4
845,042 + +0.1
845,043 - +0.2
845,043 - -0.6
845,043 - +0.1
845,525 + GFF1972 0.42 -0.4
845,525 + GFF1972 0.42 +0.1
845,526 - GFF1972 0.42 -1.4
845,549 + GFF1972 0.45 +0.0
845,549 + GFF1972 0.45 +0.2
845,549 + GFF1972 0.45 -0.6
845,549 + GFF1972 0.45 -1.3
845,549 + GFF1972 0.45 -0.6
845,549 + GFF1972 0.45 -0.1
845,549 + GFF1972 0.45 -0.7
845,549 + GFF1972 0.45 +0.4
845,550 - GFF1972 0.45 -1.1
845,550 - GFF1972 0.45 -0.3
845,550 - GFF1972 0.45 -0.6
845,550 - GFF1972 0.45 -0.0
845,550 - GFF1972 0.45 +0.3
846,108 + +0.3
846,109 - -0.5
846,109 - -0.1
846,163 + -0.4
846,163 + -0.7
846,163 + -0.0
846,163 + -0.7
846,164 - -0.2
846,164 - -0.6
846,164 - -0.9
846,164 - -0.3
846,173 - -0.3
846,361 + GFF1973 0.11 -0.5
846,361 + GFF1973 0.11 +0.6
846,361 + GFF1973 0.11 -0.6
846,361 + GFF1973 0.11 -0.9
846,361 + GFF1973 0.11 -0.7
846,362 - GFF1973 0.11 -0.2
846,362 - GFF1973 0.11 -0.4
846,362 - GFF1973 0.11 -0.2
846,362 - GFF1973 0.11 -0.5
846,362 - GFF1973 0.11 -0.8
846,410 - GFF1973 0.15 -0.6
846,550 + GFF1973 0.25 -0.5
846,551 - GFF1973 0.25 -0.5
846,551 - GFF1973 0.25 -0.5
846,598 + GFF1973 0.29 -1.1
846,598 + GFF1973 0.29 -0.7
846,598 + GFF1973 0.29 -0.4
846,598 + GFF1973 0.29 -0.7
846,599 - GFF1973 0.29 -0.4
846,599 - GFF1973 0.29 -0.4
846,599 - GFF1973 0.29 +0.0
846,599 - GFF1973 0.29 -0.5
846,599 - GFF1973 0.29 +0.6
846,599 - GFF1973 0.29 -0.8
846,628 + GFF1973 0.31 +0.5
846,628 + GFF1973 0.31 -0.4
846,629 - GFF1973 0.31 -0.4
846,629 - GFF1973 0.31 -0.7
846,629 - GFF1973 0.31 -0.4
846,629 - GFF1973 0.31 -0.8
846,631 + GFF1973 0.31 -1.7
846,631 + GFF1973 0.31 -0.6
846,631 + GFF1973 0.31 -0.3
846,631 + GFF1973 0.31 +0.5
846,631 + GFF1973 0.31 -1.8
846,631 + GFF1973 0.31 +0.3
846,631 + GFF1973 0.31 -0.2
846,631 + GFF1973 0.31 -0.3
846,632 - GFF1973 0.31 -0.3
846,632 - GFF1973 0.31 -0.2
846,632 - GFF1973 0.31 -0.6
846,632 - GFF1973 0.31 +0.2
846,632 - GFF1973 0.31 -0.5
846,632 - GFF1973 0.31 -0.6
846,632 - GFF1973 0.31 -0.2
846,632 - GFF1973 0.31 -1.4
846,632 - GFF1973 0.31 -0.7
846,781 + GFF1973 0.42 -0.6
846,781 + GFF1973 0.42 +0.1
846,781 + GFF1973 0.42 -0.3
846,781 + GFF1973 0.42 -0.5
846,781 + GFF1973 0.42 -0.2
846,781 + GFF1973 0.42 +0.1
846,782 - GFF1973 0.42 -1.2
846,782 - GFF1973 0.42 -0.8
846,994 + GFF1973 0.58 -0.9
846,995 - GFF1973 0.58 -0.3
847,039 + GFF1973 0.61 +0.4
847,040 - GFF1973 0.61 -1.4
847,054 + GFF1973 0.62 -0.8
847,054 + GFF1973 0.62 -0.7
847,055 - GFF1973 0.62 -0.7
847,055 - GFF1973 0.62 +0.9
847,055 - GFF1973 0.62 -0.3

Or see this region's nucleotide sequence