Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1871 and GFF1872 are separated by 40 nucleotides GFF1872 and GFF1873 are separated by 8 nucleotides GFF1873 and GFF1874 are separated by 238 nucleotides GFF1874 and GFF1875 are separated by 7 nucleotides
GFF1871 - Hypothetical metal-binding enzyme, YcbL homolog, at 736,156 to 736,794
GFF1871
GFF1872 - Phenylalanyl-tRNA synthetase beta subunit, at 736,835 to 737,320
GFF1872
GFF1873 - Transcriptional regulator, at 737,329 to 738,240
GFF1873
GFF1874 - Mannose-6-phosphate isomerase, at 738,479 to 739,042
GFF1874
GFF1875 - hydrolase, alpha/beta fold family, at 739,050 to 739,829
GFF1875
Position (kb) 737
738
739 Strain fitness (log2 ratio) -1
0
1 at 736.395 kb on + strand, within GFF1871 at 736.396 kb on - strand, within GFF1871 at 736.784 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.820 kb on - strand at 736.820 kb on - strand at 736.838 kb on + strand at 736.838 kb on + strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.919 kb on + strand, within GFF1872 at 736.919 kb on + strand, within GFF1872 at 737.114 kb on + strand, within GFF1872 at 737.114 kb on + strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.124 kb on - strand, within GFF1872 at 737.255 kb on + strand, within GFF1872 at 737.255 kb on + strand, within GFF1872 at 737.256 kb on - strand, within GFF1872 at 737.256 kb on - strand, within GFF1872 at 737.618 kb on + strand, within GFF1873 at 737.618 kb on + strand, within GFF1873 at 737.618 kb on + strand, within GFF1873 at 737.619 kb on - strand, within GFF1873 at 737.619 kb on - strand, within GFF1873 at 737.783 kb on + strand, within GFF1873 at 737.783 kb on + strand, within GFF1873 at 737.924 kb on + strand, within GFF1873 at 737.924 kb on + strand, within GFF1873 at 737.925 kb on - strand, within GFF1873 at 737.925 kb on - strand, within GFF1873 at 738.034 kb on - strand, within GFF1873 at 738.322 kb on - strand at 738.362 kb on - strand at 738.608 kb on + strand, within GFF1874 at 738.608 kb on + strand, within GFF1874 at 738.609 kb on - strand, within GFF1874 at 738.609 kb on - strand, within GFF1874 at 738.610 kb on - strand, within GFF1874 at 739.016 kb on + strand at 739.017 kb on - strand at 739.083 kb on + strand at 739.083 kb on + strand at 739.083 kb on + strand at 739.084 kb on - strand at 739.084 kb on - strand at 739.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 736,395 + GFF1871 0.37 -0.4 736,396 - GFF1871 0.38 +1.1 736,784 + +0.4 736,819 + -0.3 736,819 + +0.4 736,819 + -0.0 736,819 + +0.2 736,819 + -0.2 736,820 - -0.2 736,820 - +0.3 736,838 + -0.0 736,838 + +0.1 736,839 - -0.0 736,839 - -0.3 736,839 - -0.2 736,839 - +0.1 736,919 + GFF1872 0.17 +0.3 736,919 + GFF1872 0.17 +0.0 737,114 + GFF1872 0.57 -1.4 737,114 + GFF1872 0.57 +0.1 737,115 - GFF1872 0.58 -0.6 737,115 - GFF1872 0.58 +0.7 737,115 - GFF1872 0.58 -0.6 737,123 + GFF1872 0.59 +0.0 737,123 + GFF1872 0.59 +0.3 737,123 + GFF1872 0.59 -0.3 737,124 - GFF1872 0.59 +0.2 737,255 + GFF1872 0.86 -0.4 737,255 + GFF1872 0.86 -0.7 737,256 - GFF1872 0.87 -0.1 737,256 - GFF1872 0.87 -0.4 737,618 + GFF1873 0.32 -0.3 737,618 + GFF1873 0.32 +0.4 737,618 + GFF1873 0.32 -0.7 737,619 - GFF1873 0.32 +0.0 737,619 - GFF1873 0.32 +0.4 737,783 + GFF1873 0.50 +0.5 737,783 + GFF1873 0.50 +0.0 737,924 + GFF1873 0.65 -0.3 737,924 + GFF1873 0.65 -0.6 737,925 - GFF1873 0.65 -0.3 737,925 - GFF1873 0.65 +0.2 738,034 - GFF1873 0.77 -0.9 738,322 - +0.0 738,362 - -0.1 738,608 + GFF1874 0.23 +0.3 738,608 + GFF1874 0.23 +1.1 738,609 - GFF1874 0.23 -0.1 738,609 - GFF1874 0.23 -0.1 738,610 - GFF1874 0.23 -0.6 739,016 + -0.2 739,017 - -0.0 739,083 + -0.1 739,083 + -0.6 739,083 + -0.7 739,084 - -0.2 739,084 - -0.3 739,084 - +0.4
Or see this region's nucleotide sequence