Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1624 and GFF1625 are separated by 67 nucleotides GFF1625 and GFF1626 overlap by 10 nucleotides
GFF1624 - Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15), at 479,169 to 480,551
GFF1624
GFF1625 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 480,619 to 481,524
GFF1625
GFF1626 - Glucokinase (EC 2.7.1.2), at 481,515 to 482,528
GFF1626
Position (kb) 480
481
482 Strain fitness (log2 ratio) -2
-1
0
1 at 479.763 kb on + strand, within GFF1624 at 479.764 kb on - strand, within GFF1624 at 479.931 kb on + strand, within GFF1624 at 479.931 kb on + strand, within GFF1624 at 479.973 kb on + strand, within GFF1624 at 479.974 kb on - strand, within GFF1624 at 479.974 kb on - strand, within GFF1624 at 480.180 kb on + strand, within GFF1624 at 480.181 kb on - strand, within GFF1624 at 480.328 kb on + strand, within GFF1624 at 480.328 kb on + strand, within GFF1624 at 480.329 kb on - strand, within GFF1624 at 480.329 kb on - strand, within GFF1624 at 480.387 kb on + strand, within GFF1624 at 480.550 kb on - strand at 480.550 kb on - strand at 480.550 kb on - strand at 480.607 kb on + strand at 480.607 kb on + strand at 480.607 kb on + strand at 480.607 kb on + strand at 480.631 kb on + strand at 480.631 kb on + strand at 480.631 kb on + strand at 480.875 kb on + strand, within GFF1625 at 480.875 kb on + strand, within GFF1625 at 480.875 kb on + strand, within GFF1625 at 480.875 kb on + strand, within GFF1625 at 480.876 kb on - strand, within GFF1625 at 480.876 kb on - strand, within GFF1625 at 480.876 kb on - strand, within GFF1625 at 480.977 kb on - strand, within GFF1625 at 481.013 kb on + strand, within GFF1625 at 481.013 kb on + strand, within GFF1625 at 481.013 kb on + strand, within GFF1625 at 481.014 kb on - strand, within GFF1625 at 481.014 kb on - strand, within GFF1625 at 481.088 kb on + strand, within GFF1625 at 481.096 kb on + strand, within GFF1625 at 481.096 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.114 kb on + strand, within GFF1625 at 481.115 kb on - strand, within GFF1625 at 481.115 kb on - strand, within GFF1625 at 481.115 kb on - strand, within GFF1625 at 481.115 kb on - strand, within GFF1625 at 481.115 kb on - strand, within GFF1625 at 481.122 kb on + strand, within GFF1625 at 481.123 kb on - strand, within GFF1625 at 481.195 kb on + strand, within GFF1625 at 481.390 kb on + strand, within GFF1625 at 481.391 kb on - strand, within GFF1625 at 481.391 kb on - strand, within GFF1625 at 481.459 kb on + strand at 481.567 kb on - strand at 481.711 kb on + strand, within GFF1626 at 481.712 kb on - strand, within GFF1626 at 482.351 kb on - strand, within GFF1626
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 479,763 + GFF1624 0.43 -0.3 479,764 - GFF1624 0.43 -0.0 479,931 + GFF1624 0.55 -0.7 479,931 + GFF1624 0.55 -0.0 479,973 + GFF1624 0.58 +0.8 479,974 - GFF1624 0.58 +0.5 479,974 - GFF1624 0.58 +0.2 480,180 + GFF1624 0.73 -0.5 480,181 - GFF1624 0.73 -2.3 480,328 + GFF1624 0.84 -0.7 480,328 + GFF1624 0.84 +0.0 480,329 - GFF1624 0.84 +0.2 480,329 - GFF1624 0.84 +0.3 480,387 + GFF1624 0.88 -0.3 480,550 - -0.2 480,550 - +0.2 480,550 - -1.2 480,607 + -0.5 480,607 + -0.5 480,607 + +0.2 480,607 + +0.9 480,631 + -0.7 480,631 + +0.7 480,631 + -0.1 480,875 + GFF1625 0.28 +1.0 480,875 + GFF1625 0.28 +0.4 480,875 + GFF1625 0.28 +0.8 480,875 + GFF1625 0.28 -0.3 480,876 - GFF1625 0.28 -0.1 480,876 - GFF1625 0.28 -0.2 480,876 - GFF1625 0.28 -0.1 480,977 - GFF1625 0.40 +0.1 481,013 + GFF1625 0.43 +0.4 481,013 + GFF1625 0.43 -0.1 481,013 + GFF1625 0.43 +0.2 481,014 - GFF1625 0.44 -0.0 481,014 - GFF1625 0.44 -0.3 481,088 + GFF1625 0.52 +0.7 481,096 + GFF1625 0.53 -0.4 481,096 + GFF1625 0.53 -0.1 481,114 + GFF1625 0.55 +0.2 481,114 + GFF1625 0.55 -0.2 481,114 + GFF1625 0.55 -1.4 481,114 + GFF1625 0.55 -0.3 481,114 + GFF1625 0.55 -0.2 481,114 + GFF1625 0.55 -0.4 481,114 + GFF1625 0.55 -1.8 481,115 - GFF1625 0.55 -0.9 481,115 - GFF1625 0.55 -2.0 481,115 - GFF1625 0.55 +0.8 481,115 - GFF1625 0.55 +0.5 481,115 - GFF1625 0.55 -0.9 481,122 + GFF1625 0.56 -0.2 481,123 - GFF1625 0.56 -0.1 481,195 + GFF1625 0.64 -0.2 481,390 + GFF1625 0.85 -0.2 481,391 - GFF1625 0.85 +0.0 481,391 - GFF1625 0.85 -0.3 481,459 + -0.9 481,567 - -0.3 481,711 + GFF1626 0.19 -0.2 481,712 - GFF1626 0.19 -0.5 482,351 - GFF1626 0.82 +0.1
Or see this region's nucleotide sequence