Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1335 and GFF1336 are separated by 18 nucleotides GFF1336 and GFF1337 overlap by 4 nucleotides GFF1337 and GFF1338 are separated by 443 nucleotides
GFF1335 - Type IV pilus biogenesis protein PilO, at 188,174 to 188,854
GFF1335
GFF1336 - Type IV pilus biogenesis protein PilN, at 188,873 to 189,490
GFF1336
GFF1337 - Type IV pilus biogenesis protein PilM, at 189,487 to 190,524
GFF1337
GFF1338 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 190,968 to 193,265
GFF1338
Position (kb)
189
190
191 Strain fitness (log2 ratio)
-1
0
1
2 at 188.550 kb on + strand, within GFF1335 at 188.550 kb on + strand, within GFF1335 at 188.550 kb on + strand, within GFF1335 at 188.551 kb on - strand, within GFF1335 at 188.551 kb on - strand, within GFF1335 at 188.551 kb on - strand, within GFF1335 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.151 kb on - strand, within GFF1336 at 189.151 kb on - strand, within GFF1336 at 189.151 kb on - strand, within GFF1336 at 189.154 kb on + strand, within GFF1336 at 189.155 kb on - strand, within GFF1336 at 189.155 kb on - strand, within GFF1336 at 189.363 kb on + strand, within GFF1336 at 189.494 kb on + strand at 189.494 kb on + strand at 189.494 kb on + strand at 189.495 kb on - strand at 189.495 kb on - strand at 189.495 kb on - strand at 189.495 kb on - strand at 189.495 kb on - strand at 189.530 kb on + strand at 189.530 kb on + strand at 189.701 kb on + strand, within GFF1337 at 189.701 kb on + strand, within GFF1337 at 189.701 kb on + strand, within GFF1337 at 189.701 kb on + strand, within GFF1337 at 189.701 kb on + strand, within GFF1337 at 189.701 kb on + strand, within GFF1337 at 189.702 kb on - strand, within GFF1337 at 189.702 kb on - strand, within GFF1337 at 189.702 kb on - strand, within GFF1337 at 189.788 kb on + strand, within GFF1337 at 189.788 kb on + strand, within GFF1337 at 189.789 kb on - strand, within GFF1337 at 189.849 kb on - strand, within GFF1337 at 189.905 kb on + strand, within GFF1337 at 189.906 kb on - strand, within GFF1337 at 189.906 kb on - strand, within GFF1337 at 189.906 kb on - strand, within GFF1337 at 190.037 kb on + strand, within GFF1337 at 190.037 kb on + strand, within GFF1337 at 190.037 kb on + strand, within GFF1337 at 190.038 kb on - strand, within GFF1337 at 190.038 kb on - strand, within GFF1337 at 190.038 kb on - strand, within GFF1337 at 190.214 kb on + strand, within GFF1337 at 190.214 kb on + strand, within GFF1337 at 190.214 kb on + strand, within GFF1337 at 190.214 kb on + strand, within GFF1337 at 190.214 kb on + strand, within GFF1337 at 190.214 kb on + strand, within GFF1337 at 190.214 kb on + strand, within GFF1337 at 190.214 kb on + strand, within GFF1337 at 190.214 kb on + strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.215 kb on - strand, within GFF1337 at 190.546 kb on + strand at 190.609 kb on - strand at 190.633 kb on + strand at 190.633 kb on + strand at 190.634 kb on - strand at 190.695 kb on + strand at 190.695 kb on + strand at 190.696 kb on - strand at 190.696 kb on - strand at 190.747 kb on + strand at 190.747 kb on + strand at 190.747 kb on + strand at 190.747 kb on + strand at 190.747 kb on + strand at 190.747 kb on + strand at 190.747 kb on + strand at 190.747 kb on + strand at 190.748 kb on - strand at 190.748 kb on - strand at 190.748 kb on - strand at 190.748 kb on - strand at 190.748 kb on - strand at 190.764 kb on + strand at 190.764 kb on + strand at 190.764 kb on + strand at 190.764 kb on + strand at 190.765 kb on - strand at 190.807 kb on - strand at 190.807 kb on - strand at 190.885 kb on + strand at 190.885 kb on + strand at 191.005 kb on - strand at 191.301 kb on + strand, within GFF1338 at 191.302 kb on - strand, within GFF1338 at 191.302 kb on - strand, within GFF1338 at 191.322 kb on + strand, within GFF1338 at 191.322 kb on + strand, within GFF1338 at 191.322 kb on + strand, within GFF1338 at 191.323 kb on - strand, within GFF1338 at 191.323 kb on - strand, within GFF1338 at 191.323 kb on - strand, within GFF1338 at 191.337 kb on + strand, within GFF1338 at 191.338 kb on - strand, within GFF1338 at 191.338 kb on - strand, within GFF1338 at 191.338 kb on - strand, within GFF1338 at 191.400 kb on + strand, within GFF1338 at 191.400 kb on + strand, within GFF1338 at 191.400 kb on + strand, within GFF1338 at 191.400 kb on + strand, within GFF1338 at 191.401 kb on - strand, within GFF1338 at 191.401 kb on - strand, within GFF1338 at 191.401 kb on - strand, within GFF1338 at 191.433 kb on + strand, within GFF1338 at 191.434 kb on - strand, within GFF1338 at 191.460 kb on + strand, within GFF1338
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 188,550 + GFF1335 0.55 +1.4 188,550 + GFF1335 0.55 +0.9 188,550 + GFF1335 0.55 -0.1 188,551 - GFF1335 0.55 +1.1 188,551 - GFF1335 0.55 +0.7 188,551 - GFF1335 0.55 +1.0 189,150 + GFF1336 0.45 +1.0 189,150 + GFF1336 0.45 +1.4 189,150 + GFF1336 0.45 +1.5 189,150 + GFF1336 0.45 +1.1 189,150 + GFF1336 0.45 +1.0 189,150 + GFF1336 0.45 +1.4 189,150 + GFF1336 0.45 +1.4 189,150 + GFF1336 0.45 +0.8 189,151 - GFF1336 0.45 +0.4 189,151 - GFF1336 0.45 +0.9 189,151 - GFF1336 0.45 +0.8 189,154 + GFF1336 0.45 +0.9 189,155 - GFF1336 0.46 +0.9 189,155 - GFF1336 0.46 +1.6 189,363 + GFF1336 0.79 +1.2 189,494 + +1.1 189,494 + +0.7 189,494 + +1.1 189,495 - +0.8 189,495 - +0.5 189,495 - +0.4 189,495 - +0.6 189,495 - +0.7 189,530 + +0.6 189,530 + +1.0 189,701 + GFF1337 0.21 +0.7 189,701 + GFF1337 0.21 +0.9 189,701 + GFF1337 0.21 +1.4 189,701 + GFF1337 0.21 +0.8 189,701 + GFF1337 0.21 +0.5 189,701 + GFF1337 0.21 +1.0 189,702 - GFF1337 0.21 +0.7 189,702 - GFF1337 0.21 +1.2 189,702 - GFF1337 0.21 +1.7 189,788 + GFF1337 0.29 +0.9 189,788 + GFF1337 0.29 +1.3 189,789 - GFF1337 0.29 +1.6 189,849 - GFF1337 0.35 +1.1 189,905 + GFF1337 0.40 -0.5 189,906 - GFF1337 0.40 +0.8 189,906 - GFF1337 0.40 +1.4 189,906 - GFF1337 0.40 -0.8 190,037 + GFF1337 0.53 -0.5 190,037 + GFF1337 0.53 +0.7 190,037 + GFF1337 0.53 +2.3 190,038 - GFF1337 0.53 +0.5 190,038 - GFF1337 0.53 +1.3 190,038 - GFF1337 0.53 +0.9 190,214 + GFF1337 0.70 +1.2 190,214 + GFF1337 0.70 +0.8 190,214 + GFF1337 0.70 +0.1 190,214 + GFF1337 0.70 +0.3 190,214 + GFF1337 0.70 +1.7 190,214 + GFF1337 0.70 +0.8 190,214 + GFF1337 0.70 +0.6 190,214 + GFF1337 0.70 +0.3 190,214 + GFF1337 0.70 +0.5 190,215 - GFF1337 0.70 +1.1 190,215 - GFF1337 0.70 +0.7 190,215 - GFF1337 0.70 +0.8 190,215 - GFF1337 0.70 +0.4 190,215 - GFF1337 0.70 +0.7 190,215 - GFF1337 0.70 +0.6 190,215 - GFF1337 0.70 +1.1 190,215 - GFF1337 0.70 +0.6 190,215 - GFF1337 0.70 +0.4 190,215 - GFF1337 0.70 +0.8 190,215 - GFF1337 0.70 +1.2 190,215 - GFF1337 0.70 +2.0 190,546 + +0.9 190,609 - +0.8 190,633 + +1.3 190,633 + +2.5 190,634 - -0.2 190,695 + +0.4 190,695 + +0.8 190,696 - +0.0 190,696 - -0.6 190,747 + +0.1 190,747 + -0.4 190,747 + +0.7 190,747 + +0.4 190,747 + +0.2 190,747 + -1.6 190,747 + +0.2 190,747 + +1.7 190,748 - +0.5 190,748 - -1.4 190,748 - -0.0 190,748 - -0.3 190,748 - -0.7 190,764 + +0.6 190,764 + +0.7 190,764 + +1.4 190,764 + +0.1 190,765 - -0.4 190,807 - +0.5 190,807 - +0.4 190,885 + +0.4 190,885 + +1.5 191,005 - -1.1 191,301 + GFF1338 0.14 -0.9 191,302 - GFF1338 0.15 -0.0 191,302 - GFF1338 0.15 +0.5 191,322 + GFF1338 0.15 +0.8 191,322 + GFF1338 0.15 -0.1 191,322 + GFF1338 0.15 -0.1 191,323 - GFF1338 0.15 -0.6 191,323 - GFF1338 0.15 -0.3 191,323 - GFF1338 0.15 -0.1 191,337 + GFF1338 0.16 -0.0 191,338 - GFF1338 0.16 +0.7 191,338 - GFF1338 0.16 +0.1 191,338 - GFF1338 0.16 -0.3 191,400 + GFF1338 0.19 -0.6 191,400 + GFF1338 0.19 +1.5 191,400 + GFF1338 0.19 -0.3 191,400 + GFF1338 0.19 +0.5 191,401 - GFF1338 0.19 +1.1 191,401 - GFF1338 0.19 -0.1 191,401 - GFF1338 0.19 -0.9 191,433 + GFF1338 0.20 +0.9 191,434 - GFF1338 0.20 +0.3 191,460 + GFF1338 0.21 +0.3
Or see this region's nucleotide sequence