Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1268

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1266 and GFF1267 overlap by 4 nucleotidesGFF1267 and GFF1268 are separated by 52 nucleotidesGFF1268 and GFF1269 are separated by 179 nucleotides GFF1266 - Peptide chain release factor 1, at 124,665 to 125,774 GFF1266 GFF1267 - Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2, at 125,771 to 126,610 GFF1267 GFF1268 - Glutaredoxin-related protein, at 126,663 to 126,986 GFF1268 GFF1269 - ATP-dependent protease domain protein (EC 3.4.21.-), at 127,166 to 128,170 GFF1269 Position (kb) 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 125.913 kb on + strand, within GFF1267at 125.913 kb on + strand, within GFF1267at 125.913 kb on + strand, within GFF1267at 125.914 kb on - strand, within GFF1267at 125.914 kb on - strand, within GFF1267at 125.981 kb on + strand, within GFF1267at 125.981 kb on + strand, within GFF1267at 125.981 kb on + strand, within GFF1267at 125.981 kb on + strand, within GFF1267at 125.981 kb on + strand, within GFF1267at 125.982 kb on - strand, within GFF1267at 125.982 kb on - strand, within GFF1267at 125.982 kb on - strand, within GFF1267at 125.982 kb on - strand, within GFF1267at 125.982 kb on - strand, within GFF1267at 125.982 kb on - strand, within GFF1267at 125.982 kb on - strand, within GFF1267at 126.332 kb on + strand, within GFF1267at 126.332 kb on + strand, within GFF1267at 126.332 kb on + strand, within GFF1267at 126.332 kb on + strand, within GFF1267at 126.332 kb on + strand, within GFF1267at 126.333 kb on - strand, within GFF1267at 126.333 kb on - strand, within GFF1267at 126.333 kb on - strand, within GFF1267at 126.333 kb on - strand, within GFF1267at 126.333 kb on - strand, within GFF1267at 126.609 kb on - strandat 126.609 kb on - strandat 126.864 kb on + strand, within GFF1268at 126.864 kb on + strand, within GFF1268at 126.864 kb on + strand, within GFF1268at 126.864 kb on + strand, within GFF1268at 126.864 kb on + strand, within GFF1268at 126.864 kb on + strand, within GFF1268at 126.865 kb on - strand, within GFF1268at 126.865 kb on - strand, within GFF1268at 126.894 kb on + strand, within GFF1268at 126.894 kb on + strand, within GFF1268at 126.894 kb on + strand, within GFF1268at 126.894 kb on + strand, within GFF1268at 126.895 kb on - strand, within GFF1268at 126.895 kb on - strand, within GFF1268at 126.895 kb on - strand, within GFF1268at 126.942 kb on + strand, within GFF1268at 126.942 kb on + strand, within GFF1268at 126.942 kb on + strand, within GFF1268at 126.943 kb on - strand, within GFF1268at 126.943 kb on - strand, within GFF1268at 126.943 kb on - strand, within GFF1268at 126.943 kb on - strand, within GFF1268at 126.943 kb on - strand, within GFF1268at 126.943 kb on - strand, within GFF1268at 126.943 kb on - strand, within GFF1268at 126.943 kb on - strand, within GFF1268at 126.943 kb on - strand, within GFF1268at 127.076 kb on + strandat 127.077 kb on - strandat 127.077 kb on - strandat 127.296 kb on - strand, within GFF1269at 127.391 kb on + strand, within GFF1269at 127.391 kb on + strand, within GFF1269at 127.676 kb on + strand, within GFF1269at 127.676 kb on + strand, within GFF1269at 127.676 kb on + strand, within GFF1269at 127.677 kb on - strand, within GFF1269at 127.677 kb on - strand, within GFF1269at 127.677 kb on - strand, within GFF1269at 127.677 kb on - strand, within GFF1269at 127.677 kb on - strand, within GFF1269at 127.677 kb on - strand, within GFF1269at 127.733 kb on + strand, within GFF1269at 127.733 kb on + strand, within GFF1269at 127.733 kb on + strand, within GFF1269at 127.733 kb on + strand, within GFF1269at 127.733 kb on + strand, within GFF1269at 127.734 kb on - strand, within GFF1269at 127.734 kb on - strand, within GFF1269at 127.734 kb on - strand, within GFF1269at 127.754 kb on + strand, within GFF1269at 127.755 kb on - strand, within GFF1269at 127.755 kb on - strand, within GFF1269at 127.755 kb on - strand, within GFF1269at 127.898 kb on + strand, within GFF1269at 127.898 kb on + strand, within GFF1269at 127.899 kb on - strand, within GFF1269at 127.899 kb on - strand, within GFF1269at 127.899 kb on - strand, within GFF1269

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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125,913 + GFF1267 0.17 +0.1
125,913 + GFF1267 0.17 +0.5
125,913 + GFF1267 0.17 -0.6
125,914 - GFF1267 0.17 -0.2
125,914 - GFF1267 0.17 -0.1
125,981 + GFF1267 0.25 -0.5
125,981 + GFF1267 0.25 -0.4
125,981 + GFF1267 0.25 +1.1
125,981 + GFF1267 0.25 +0.3
125,981 + GFF1267 0.25 -0.6
125,982 - GFF1267 0.25 -0.3
125,982 - GFF1267 0.25 -0.5
125,982 - GFF1267 0.25 -0.0
125,982 - GFF1267 0.25 -0.6
125,982 - GFF1267 0.25 +0.1
125,982 - GFF1267 0.25 -0.1
125,982 - GFF1267 0.25 -0.5
126,332 + GFF1267 0.67 +0.6
126,332 + GFF1267 0.67 +1.4
126,332 + GFF1267 0.67 +0.4
126,332 + GFF1267 0.67 -0.2
126,332 + GFF1267 0.67 -1.8
126,333 - GFF1267 0.67 -1.3
126,333 - GFF1267 0.67 -1.0
126,333 - GFF1267 0.67 +0.1
126,333 - GFF1267 0.67 -0.2
126,333 - GFF1267 0.67 -0.3
126,609 - +0.1
126,609 - +0.0
126,864 + GFF1268 0.62 -0.3
126,864 + GFF1268 0.62 +0.0
126,864 + GFF1268 0.62 +0.4
126,864 + GFF1268 0.62 -0.1
126,864 + GFF1268 0.62 +0.4
126,864 + GFF1268 0.62 -0.7
126,865 - GFF1268 0.62 -0.0
126,865 - GFF1268 0.62 +0.3
126,894 + GFF1268 0.71 +0.2
126,894 + GFF1268 0.71 +0.3
126,894 + GFF1268 0.71 -0.3
126,894 + GFF1268 0.71 +1.0
126,895 - GFF1268 0.72 +0.5
126,895 - GFF1268 0.72 -0.0
126,895 - GFF1268 0.72 -0.2
126,942 + GFF1268 0.86 +0.5
126,942 + GFF1268 0.86 +0.6
126,942 + GFF1268 0.86 +0.9
126,943 - GFF1268 0.86 +0.0
126,943 - GFF1268 0.86 -0.2
126,943 - GFF1268 0.86 +0.1
126,943 - GFF1268 0.86 -1.0
126,943 - GFF1268 0.86 +0.0
126,943 - GFF1268 0.86 -0.2
126,943 - GFF1268 0.86 +1.2
126,943 - GFF1268 0.86 -0.3
126,943 - GFF1268 0.86 +0.1
127,076 + +0.4
127,077 - -1.6
127,077 - +0.6
127,296 - GFF1269 0.13 -0.3
127,391 + GFF1269 0.22 -0.0
127,391 + GFF1269 0.22 -0.2
127,676 + GFF1269 0.51 -0.1
127,676 + GFF1269 0.51 -0.4
127,676 + GFF1269 0.51 +0.4
127,677 - GFF1269 0.51 -0.2
127,677 - GFF1269 0.51 +1.2
127,677 - GFF1269 0.51 +1.8
127,677 - GFF1269 0.51 -0.5
127,677 - GFF1269 0.51 +0.3
127,677 - GFF1269 0.51 +0.2
127,733 + GFF1269 0.56 +0.3
127,733 + GFF1269 0.56 +0.1
127,733 + GFF1269 0.56 +0.1
127,733 + GFF1269 0.56 -0.2
127,733 + GFF1269 0.56 -0.1
127,734 - GFF1269 0.57 -0.4
127,734 - GFF1269 0.57 +0.3
127,734 - GFF1269 0.57 -0.2
127,754 + GFF1269 0.59 +0.0
127,755 - GFF1269 0.59 -0.3
127,755 - GFF1269 0.59 +0.2
127,755 - GFF1269 0.59 -0.2
127,898 + GFF1269 0.73 +0.9
127,898 + GFF1269 0.73 +0.4
127,899 - GFF1269 0.73 +0.2
127,899 - GFF1269 0.73 -0.8
127,899 - GFF1269 0.73 -0.1

Or see this region's nucleotide sequence