Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1125 and GFF1126 are separated by 20 nucleotides GFF1126 and GFF1127 are separated by 148 nucleotides GFF1127 and GFF1128 are separated by 128 nucleotides GFF1128 and GFF1129 are separated by 97 nucleotides
GFF1125 - putative ORF1 [Plasmid pTOM9], at 55,291 to 56,028
GFF1125
GFF1126 - putative (L31491) ORF2; putative [Plasmid pTOM9], at 56,049 to 56,702
GFF1126
GFF1127 - Cobalt-zinc-cadmium resistance protein CzcD, at 56,851 to 57,885
GFF1127
GFF1128 - hypothetical protein, at 58,014 to 58,295
GFF1128
GFF1129 - Heavy metal RND efflux outer membrane protein, CzcC family, at 58,393 to 59,685
GFF1129
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1 at 55.916 kb on - strand, within GFF1125 at 55.952 kb on - strand, within GFF1125 at 55.952 kb on - strand, within GFF1125 at 56.052 kb on + strand at 56.052 kb on + strand at 56.052 kb on + strand at 56.173 kb on - strand, within GFF1126 at 56.475 kb on + strand, within GFF1126 at 56.620 kb on - strand, within GFF1126 at 56.657 kb on - strand at 56.677 kb on - strand at 57.118 kb on + strand, within GFF1127 at 57.118 kb on + strand, within GFF1127 at 57.137 kb on - strand, within GFF1127 at 57.273 kb on + strand, within GFF1127 at 57.281 kb on - strand, within GFF1127 at 57.446 kb on - strand, within GFF1127 at 57.514 kb on + strand, within GFF1127 at 57.514 kb on + strand, within GFF1127 at 57.515 kb on - strand, within GFF1127 at 57.515 kb on - strand, within GFF1127 at 57.515 kb on - strand, within GFF1127 at 57.571 kb on + strand, within GFF1127 at 57.572 kb on - strand, within GFF1127 at 57.614 kb on + strand, within GFF1127 at 57.615 kb on - strand, within GFF1127 at 57.615 kb on - strand, within GFF1127 at 57.682 kb on + strand, within GFF1127 at 57.683 kb on - strand, within GFF1127 at 57.683 kb on - strand, within GFF1127 at 57.844 kb on + strand at 57.890 kb on + strand at 57.890 kb on + strand at 57.895 kb on + strand at 57.896 kb on - strand at 57.914 kb on + strand at 57.915 kb on - strand at 57.915 kb on - strand at 57.915 kb on - strand at 57.940 kb on + strand at 58.243 kb on + strand, within GFF1128
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 55,916 - GFF1125 0.85 -0.8 55,952 - GFF1125 0.90 +0.1 55,952 - GFF1125 0.90 -0.4 56,052 + -0.0 56,052 + +1.3 56,052 + +0.7 56,173 - GFF1126 0.19 -0.8 56,475 + GFF1126 0.65 -0.4 56,620 - GFF1126 0.87 +1.0 56,657 - +0.0 56,677 - +1.0 57,118 + GFF1127 0.26 -0.1 57,118 + GFF1127 0.26 +0.2 57,137 - GFF1127 0.28 -0.4 57,273 + GFF1127 0.41 -1.1 57,281 - GFF1127 0.42 -0.1 57,446 - GFF1127 0.57 +0.9 57,514 + GFF1127 0.64 +0.8 57,514 + GFF1127 0.64 -0.9 57,515 - GFF1127 0.64 -0.1 57,515 - GFF1127 0.64 -0.1 57,515 - GFF1127 0.64 -1.0 57,571 + GFF1127 0.70 -0.1 57,572 - GFF1127 0.70 -0.3 57,614 + GFF1127 0.74 +0.6 57,615 - GFF1127 0.74 +0.3 57,615 - GFF1127 0.74 -0.2 57,682 + GFF1127 0.80 -0.7 57,683 - GFF1127 0.80 +0.6 57,683 - GFF1127 0.80 -0.8 57,844 + -0.0 57,890 + -0.3 57,890 + -0.2 57,895 + +0.1 57,896 - -0.9 57,914 + +0.4 57,915 - +0.2 57,915 - +0.0 57,915 - +0.1 57,940 + -0.8 58,243 + GFF1128 0.81 -0.6
Or see this region's nucleotide sequence