Experiment: BHIS_CaCl2 no phage control with 14 member community
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EFB2_04027 and EFB2_04028 are separated by 614 nucleotides EFB2_04028 and EFB2_04029 are separated by 104 nucleotides EFB2_04029 and EFB2_04030 are separated by 88 nucleotides
EFB2_04027: EFB2_04027 - hypothetical protein, at 4,234,381 to 4,235,142
_04027
EFB2_04028: EFB2_04028 - Toxic protein HokC, at 4,235,757 to 4,235,909
_04028
EFB2_04029: EFB2_04029 - Chaperone protein DnaJ, at 4,236,014 to 4,237,144
_04029
EFB2_04030: EFB2_04030 - Chaperone protein DnaK, at 4,237,233 to 4,239,149
_04030
Position (kb) 4236
4237
4238 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4235.038 kb on + strand, within EFB2_04027 at 4235.065 kb on + strand, within EFB2_04027 at 4235.094 kb on + strand at 4235.094 kb on + strand at 4235.094 kb on + strand at 4235.095 kb on - strand at 4235.118 kb on + strand at 4235.142 kb on + strand at 4235.142 kb on + strand at 4235.145 kb on - strand at 4235.147 kb on + strand at 4235.148 kb on - strand at 4235.187 kb on - strand at 4235.187 kb on - strand at 4235.232 kb on + strand at 4235.387 kb on + strand at 4235.388 kb on - strand at 4235.388 kb on - strand at 4235.404 kb on - strand at 4235.405 kb on + strand at 4235.408 kb on + strand at 4235.408 kb on + strand at 4235.411 kb on + strand at 4235.411 kb on + strand at 4235.411 kb on + strand at 4235.411 kb on + strand at 4235.412 kb on - strand at 4235.412 kb on - strand at 4235.568 kb on + strand at 4235.568 kb on + strand at 4235.568 kb on + strand at 4235.569 kb on - strand at 4235.595 kb on + strand at 4235.595 kb on + strand at 4235.595 kb on + strand at 4235.596 kb on - strand at 4235.596 kb on - strand at 4235.597 kb on + strand at 4235.597 kb on + strand at 4235.597 kb on + strand at 4235.597 kb on + strand at 4235.598 kb on - strand at 4235.598 kb on - strand at 4235.600 kb on + strand at 4235.636 kb on + strand at 4235.637 kb on - strand at 4235.637 kb on - strand at 4235.671 kb on + strand at 4235.671 kb on + strand at 4235.672 kb on - strand at 4235.676 kb on + strand at 4235.676 kb on + strand at 4235.677 kb on - strand at 4235.677 kb on - strand at 4235.697 kb on + strand at 4235.697 kb on + strand at 4235.697 kb on + strand at 4235.697 kb on + strand at 4235.697 kb on + strand at 4235.697 kb on + strand at 4235.697 kb on + strand at 4235.697 kb on + strand at 4235.697 kb on + strand at 4235.698 kb on - strand at 4235.698 kb on - strand at 4235.698 kb on - strand at 4235.698 kb on - strand at 4235.698 kb on - strand at 4235.699 kb on + strand at 4235.699 kb on + strand at 4235.699 kb on + strand at 4235.699 kb on + strand at 4235.700 kb on - strand at 4235.700 kb on - strand at 4235.700 kb on - strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.714 kb on + strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.715 kb on - strand at 4235.727 kb on - strand at 4235.727 kb on - strand at 4235.727 kb on - strand at 4235.768 kb on + strand at 4235.768 kb on + strand at 4235.768 kb on + strand at 4235.768 kb on + strand at 4235.769 kb on - strand at 4235.769 kb on - strand at 4235.769 kb on - strand at 4235.769 kb on - strand at 4235.769 kb on - strand at 4235.769 kb on - strand at 4235.801 kb on + strand, within EFB2_04028 at 4235.801 kb on + strand, within EFB2_04028 at 4235.801 kb on + strand, within EFB2_04028 at 4235.801 kb on + strand, within EFB2_04028 at 4235.802 kb on - strand, within EFB2_04028 at 4235.802 kb on - strand, within EFB2_04028 at 4235.802 kb on - strand, within EFB2_04028 at 4235.895 kb on + strand at 4235.895 kb on + strand at 4235.896 kb on - strand at 4235.896 kb on - strand at 4235.907 kb on + strand at 4235.908 kb on - strand at 4235.941 kb on + strand at 4235.941 kb on + strand at 4235.955 kb on + strand at 4235.955 kb on + strand at 4235.955 kb on + strand at 4235.955 kb on + strand at 4235.955 kb on + strand at 4235.955 kb on + strand at 4235.955 kb on + strand at 4235.956 kb on - strand at 4235.956 kb on - strand at 4235.956 kb on - strand at 4235.956 kb on - strand at 4235.956 kb on - strand at 4236.153 kb on - strand, within EFB2_04029 at 4236.153 kb on - strand, within EFB2_04029 at 4236.180 kb on - strand, within EFB2_04029 at 4236.233 kb on - strand, within EFB2_04029 at 4236.300 kb on - strand, within EFB2_04029 at 4236.300 kb on - strand, within EFB2_04029 at 4236.300 kb on - strand, within EFB2_04029 at 4236.354 kb on + strand, within EFB2_04029 at 4236.412 kb on - strand, within EFB2_04029 at 4236.412 kb on - strand, within EFB2_04029 at 4236.788 kb on - strand, within EFB2_04029 at 4236.788 kb on - strand, within EFB2_04029 at 4236.788 kb on - strand, within EFB2_04029 at 4236.788 kb on - strand, within EFB2_04029 at 4236.790 kb on - strand, within EFB2_04029 at 4236.790 kb on - strand, within EFB2_04029 at 4236.790 kb on - strand, within EFB2_04029 at 4236.790 kb on - strand, within EFB2_04029 at 4236.795 kb on - strand, within EFB2_04029 at 4236.939 kb on + strand, within EFB2_04029 at 4236.940 kb on - strand, within EFB2_04029 at 4236.940 kb on - strand, within EFB2_04029 at 4236.940 kb on - strand, within EFB2_04029 at 4236.940 kb on - strand, within EFB2_04029 at 4236.949 kb on - strand, within EFB2_04029 at 4236.949 kb on - strand, within EFB2_04029 at 4236.984 kb on + strand, within EFB2_04029 at 4236.985 kb on - strand, within EFB2_04029 at 4236.985 kb on - strand, within EFB2_04029 at 4236.985 kb on - strand, within EFB2_04029 at 4236.985 kb on - strand, within EFB2_04029 at 4237.050 kb on + strand at 4237.050 kb on + strand at 4237.050 kb on + strand at 4237.050 kb on + strand at 4237.051 kb on - strand at 4237.051 kb on - strand at 4237.051 kb on - strand at 4237.051 kb on - strand at 4237.051 kb on - strand at 4237.072 kb on - strand at 4237.072 kb on - strand at 4237.125 kb on + strand at 4237.125 kb on + strand at 4237.126 kb on - strand at 4237.126 kb on - strand at 4237.129 kb on - strand at 4237.138 kb on + strand at 4237.138 kb on + strand at 4237.139 kb on - strand at 4237.139 kb on - strand at 4237.162 kb on + strand at 4237.162 kb on + strand at 4237.162 kb on + strand at 4237.163 kb on - strand at 4237.163 kb on - strand at 4237.163 kb on - strand at 4237.163 kb on - strand at 4237.163 kb on - strand at 4237.210 kb on - strand at 4237.210 kb on - strand at 4237.210 kb on - strand at 4237.210 kb on - strand at 4237.211 kb on + strand at 4237.211 kb on + strand at 4237.211 kb on + strand at 4237.211 kb on + strand at 4237.211 kb on + strand at 4237.211 kb on + strand at 4237.211 kb on + strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.212 kb on - strand at 4237.215 kb on + strand at 4237.216 kb on - strand at 4237.224 kb on - strand at 4237.224 kb on - strand at 4237.226 kb on - strand at 4237.226 kb on - strand at 4237.235 kb on - strand at 4237.552 kb on - strand, within EFB2_04030 at 4237.552 kb on - strand, within EFB2_04030 at 4237.552 kb on - strand, within EFB2_04030 at 4237.569 kb on - strand, within EFB2_04030 at 4237.569 kb on - strand, within EFB2_04030 at 4237.569 kb on - strand, within EFB2_04030 at 4237.587 kb on - strand, within EFB2_04030
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS_CaCl2 no phage control with 14 member community remove 4,235,038 + EFB2_04027 0.86 +2.0 4,235,065 + EFB2_04027 0.90 -0.9 4,235,094 + +0.1 4,235,094 + +1.7 4,235,094 + -2.3 4,235,095 - -0.3 4,235,118 + -1.1 4,235,142 + +0.2 4,235,142 + +1.4 4,235,145 - -2.3 4,235,147 + +0.5 4,235,148 - +0.5 4,235,187 - -2.0 4,235,187 - +0.8 4,235,232 + +1.6 4,235,387 + -2.6 4,235,388 - -2.0 4,235,388 - +0.6 4,235,404 - -0.3 4,235,405 + +0.1 4,235,408 + -0.0 4,235,408 + -3.1 4,235,411 + +0.6 4,235,411 + -4.3 4,235,411 + -0.5 4,235,411 + +1.6 4,235,412 - +3.6 4,235,412 - -2.4 4,235,568 + -0.5 4,235,568 + -0.7 4,235,568 + +0.2 4,235,569 - -1.6 4,235,595 + +1.6 4,235,595 + +0.6 4,235,595 + +0.3 4,235,596 - +0.4 4,235,596 - -1.6 4,235,597 + +1.7 4,235,597 + -0.1 4,235,597 + +3.4 4,235,597 + -0.0 4,235,598 - +1.0 4,235,598 - -0.8 4,235,600 + +2.4 4,235,636 + +1.3 4,235,637 - +1.2 4,235,637 - -1.2 4,235,671 + +1.5 4,235,671 + -0.8 4,235,672 - +0.4 4,235,676 + +0.4 4,235,676 + +1.7 4,235,677 - +0.2 4,235,677 - -0.8 4,235,697 + +0.4 4,235,697 + -0.3 4,235,697 + -0.9 4,235,697 + +0.3 4,235,697 + -0.2 4,235,697 + +0.4 4,235,697 + +0.3 4,235,697 + -0.1 4,235,697 + +1.7 4,235,698 - -1.0 4,235,698 - -1.1 4,235,698 - +0.6 4,235,698 - -0.7 4,235,698 - -1.1 4,235,699 + -1.2 4,235,699 + -1.3 4,235,699 + -0.5 4,235,699 + +0.2 4,235,700 - -3.5 4,235,700 - -0.2 4,235,700 - -0.2 4,235,714 + -0.3 4,235,714 + -2.4 4,235,714 + +1.1 4,235,714 + +0.5 4,235,714 + +0.8 4,235,714 + +0.7 4,235,714 + +0.3 4,235,714 + +1.3 4,235,714 + -1.0 4,235,714 + -0.6 4,235,714 + +0.6 4,235,714 + -0.2 4,235,714 + -0.0 4,235,714 + +2.1 4,235,714 + +0.0 4,235,714 + +0.4 4,235,714 + -0.0 4,235,714 + -2.4 4,235,714 + -2.1 4,235,714 + -0.4 4,235,714 + -1.0 4,235,714 + +1.5 4,235,714 + +1.5 4,235,715 - +1.4 4,235,715 - -0.7 4,235,715 - +0.2 4,235,715 - -1.2 4,235,715 - +0.7 4,235,715 - -0.5 4,235,715 - +0.2 4,235,715 - +0.4 4,235,715 - -0.8 4,235,715 - -0.1 4,235,715 - -1.1 4,235,715 - +1.4 4,235,715 - -0.1 4,235,715 - +0.5 4,235,715 - -0.1 4,235,715 - -1.1 4,235,715 - +1.3 4,235,727 - +0.2 4,235,727 - +0.1 4,235,727 - -1.6 4,235,768 + -1.0 4,235,768 + +0.4 4,235,768 + +1.7 4,235,768 + -1.6 4,235,769 - +0.6 4,235,769 - +1.0 4,235,769 - -1.0 4,235,769 - +1.3 4,235,769 - -0.2 4,235,769 - +1.3 4,235,801 + EFB2_04028 0.29 +0.2 4,235,801 + EFB2_04028 0.29 +0.9 4,235,801 + EFB2_04028 0.29 -0.2 4,235,801 + EFB2_04028 0.29 +1.2 4,235,802 - EFB2_04028 0.29 -3.1 4,235,802 - EFB2_04028 0.29 +0.7 4,235,802 - EFB2_04028 0.29 -1.5 4,235,895 + -1.5 4,235,895 + -0.4 4,235,896 - -0.8 4,235,896 - +1.7 4,235,907 + +1.0 4,235,908 - -0.8 4,235,941 + -0.2 4,235,941 + +0.2 4,235,955 + -1.1 4,235,955 + -0.8 4,235,955 + -1.4 4,235,955 + +0.7 4,235,955 + -2.1 4,235,955 + -1.4 4,235,955 + -2.4 4,235,956 - -1.8 4,235,956 - -2.1 4,235,956 - -0.4 4,235,956 - -1.5 4,235,956 - -1.3 4,236,153 - EFB2_04029 0.12 -0.9 4,236,153 - EFB2_04029 0.12 -2.4 4,236,180 - EFB2_04029 0.15 +1.3 4,236,233 - EFB2_04029 0.19 -1.9 4,236,300 - EFB2_04029 0.25 -0.3 4,236,300 - EFB2_04029 0.25 -1.3 4,236,300 - EFB2_04029 0.25 -1.5 4,236,354 + EFB2_04029 0.30 -0.8 4,236,412 - EFB2_04029 0.35 -1.3 4,236,412 - EFB2_04029 0.35 -1.4 4,236,788 - EFB2_04029 0.68 -0.5 4,236,788 - EFB2_04029 0.68 +1.0 4,236,788 - EFB2_04029 0.68 -0.8 4,236,788 - EFB2_04029 0.68 +0.5 4,236,790 - EFB2_04029 0.69 -1.0 4,236,790 - EFB2_04029 0.69 +1.3 4,236,790 - EFB2_04029 0.69 -2.1 4,236,790 - EFB2_04029 0.69 -1.6 4,236,795 - EFB2_04029 0.69 -1.3 4,236,939 + EFB2_04029 0.82 -1.8 4,236,940 - EFB2_04029 0.82 +0.2 4,236,940 - EFB2_04029 0.82 -1.4 4,236,940 - EFB2_04029 0.82 -0.3 4,236,940 - EFB2_04029 0.82 +0.4 4,236,949 - EFB2_04029 0.83 -0.2 4,236,949 - EFB2_04029 0.83 -3.3 4,236,984 + EFB2_04029 0.86 -2.4 4,236,985 - EFB2_04029 0.86 +1.0 4,236,985 - EFB2_04029 0.86 +0.4 4,236,985 - EFB2_04029 0.86 -1.3 4,236,985 - EFB2_04029 0.86 -1.7 4,237,050 + -2.5 4,237,050 + -1.3 4,237,050 + -2.0 4,237,050 + -0.3 4,237,051 - -0.4 4,237,051 - -2.2 4,237,051 - -1.5 4,237,051 - +1.0 4,237,051 - -1.6 4,237,072 - +0.0 4,237,072 - -2.1 4,237,125 + -1.7 4,237,125 + -0.6 4,237,126 - -2.1 4,237,126 - -2.6 4,237,129 - -1.8 4,237,138 + -0.8 4,237,138 + -1.0 4,237,139 - -2.9 4,237,139 - -2.1 4,237,162 + +0.0 4,237,162 + +1.0 4,237,162 + +0.3 4,237,163 - -0.8 4,237,163 - +0.7 4,237,163 - -3.1 4,237,163 - +1.1 4,237,163 - +0.1 4,237,210 - -0.2 4,237,210 - +0.3 4,237,210 - -0.3 4,237,210 - -2.6 4,237,211 + -1.1 4,237,211 + -2.2 4,237,211 + -1.6 4,237,211 + -0.8 4,237,211 + -1.7 4,237,211 + -2.1 4,237,211 + -1.6 4,237,212 - -0.0 4,237,212 - +0.1 4,237,212 - +0.0 4,237,212 - +0.4 4,237,212 - -1.0 4,237,212 - +0.2 4,237,212 - +0.3 4,237,212 - +0.4 4,237,212 - +0.6 4,237,212 - -0.1 4,237,212 - -0.0 4,237,212 - +0.4 4,237,212 - +0.7 4,237,212 - -0.3 4,237,212 - -3.3 4,237,212 - -2.1 4,237,212 - -1.6 4,237,215 + +0.0 4,237,216 - -0.9 4,237,224 - -0.8 4,237,224 - +0.9 4,237,226 - -0.6 4,237,226 - -0.4 4,237,235 - -0.2 4,237,552 - EFB2_04030 0.17 -0.9 4,237,552 - EFB2_04030 0.17 -2.0 4,237,552 - EFB2_04030 0.17 -1.7 4,237,569 - EFB2_04030 0.18 -1.1 4,237,569 - EFB2_04030 0.18 -2.1 4,237,569 - EFB2_04030 0.18 -0.6 4,237,587 - EFB2_04030 0.18 -1.2
Or see this region's nucleotide sequence