Strain Fitness in Escherichia fergusonii Becca around EFB2_01401

Experiment: BHIS_CaCl2 no phage control with 14 member community

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with 14 member community
1,465,307	+				+1.1
1,465,307	+				+0.2
1,465,340	+				-1.7
1,465,340	+				+0.5
1,465,387	+				+1.1
1,465,388	-				-0.6
1,465,393	+				+1.9
1,465,393	+				+0.2
1,465,393	+				+0.4
1,465,393	+				-3.0
1,465,393	+				-0.8
1,465,393	+				-0.8
1,465,393	+				+1.0
1,465,393	+				+0.6
1,465,393	+				-1.0
1,465,393	+				-2.2
1,465,394	-				+0.8
1,465,394	-				-2.7
1,465,394	-				-2.3
1,465,451	+				+2.3
1,465,457	-				-0.9
1,465,487	+				-1.0
1,465,503	-				-0.2
1,465,529	+				-0.5
1,465,529	+				+2.5
1,465,529	+				+0.8
1,465,529	+				+0.5
1,465,529	+				+1.9
1,465,530	-				+0.5
1,465,530	-				-1.1
1,465,530	-				-2.0
1,465,530	-				-1.1
1,465,530	-				-0.1
1,465,531	+				-1.0
1,465,531	+				-0.2
1,465,532	-				+0.1
1,465,576	+				-0.2
1,465,576	+				-0.8
1,465,577	-				-1.0
1,465,642	+		EFB2_01400	0.10	+0.0
1,465,642	+		EFB2_01400	0.10	-1.1
1,465,642	+		EFB2_01400	0.10	+1.0
1,465,684	+		EFB2_01400	0.17	-0.4
1,465,697	+		EFB2_01400	0.19	+1.4
1,465,697	+		EFB2_01400	0.19	-0.3
1,465,697	+		EFB2_01400	0.19	+0.8
1,465,697	+		EFB2_01400	0.19	+0.3
1,465,697	+		EFB2_01400	0.19	-2.6
1,465,697	+		EFB2_01400	0.19	-0.3
1,465,698	-		EFB2_01400	0.19	+0.9
1,465,698	-		EFB2_01400	0.19	-1.3
1,465,698	-		EFB2_01400	0.19	+1.2
1,465,698	-		EFB2_01400	0.19	-1.0
1,465,731	+		EFB2_01400	0.25	-2.5
1,465,731	+		EFB2_01400	0.25	+0.0
1,465,731	+		EFB2_01400	0.25	-2.8
1,465,731	+		EFB2_01400	0.25	+3.6
1,465,735	+		EFB2_01400	0.25	+0.3
1,465,736	-		EFB2_01400	0.25	-1.5
1,465,876	+		EFB2_01400	0.48	+0.2
1,465,876	+		EFB2_01400	0.48	-2.3
1,465,876	+		EFB2_01400	0.48	-1.5
1,465,876	+		EFB2_01400	0.48	-2.5
1,465,876	+		EFB2_01400	0.48	-0.7
1,465,877	-		EFB2_01400	0.48	-1.5
1,465,877	-		EFB2_01400	0.48	+2.5
1,465,877	-		EFB2_01400	0.48	+0.0
1,465,877	-		EFB2_01400	0.48	+0.5
1,465,877	-		EFB2_01400	0.48	-0.3
1,465,880	+		EFB2_01400	0.48	+0.6
1,465,880	+		EFB2_01400	0.48	+0.0
1,465,880	+		EFB2_01400	0.48	+1.6
1,465,880	+		EFB2_01400	0.48	+0.1
1,465,880	+		EFB2_01400	0.48	+0.9
1,465,880	+		EFB2_01400	0.48	+0.6
1,465,880	+		EFB2_01400	0.48	-0.3
1,465,880	+		EFB2_01400	0.48	-0.8
1,465,880	+		EFB2_01400	0.48	-0.3
1,465,880	+		EFB2_01400	0.48	-2.2
1,465,881	-		EFB2_01400	0.48	-1.1
1,465,881	-		EFB2_01400	0.48	+1.3
1,465,881	-		EFB2_01400	0.48	+0.6
1,465,881	-		EFB2_01400	0.48	-1.8
1,465,881	-		EFB2_01400	0.48	+2.3
1,465,881	-		EFB2_01400	0.48	-2.5
1,465,881	-		EFB2_01400	0.48	-2.0
1,465,886	-		EFB2_01400	0.49	-1.8
1,465,886	-		EFB2_01400	0.49	-0.3
1,465,913	+		EFB2_01400	0.54	-0.7
1,465,913	+		EFB2_01400	0.54	-1.0
1,465,913	+		EFB2_01400	0.54	+0.9
1,465,914	-		EFB2_01400	0.54	-2.9
1,465,933	+		EFB2_01400	0.57	-2.1
1,465,948	+		EFB2_01400	0.59	+1.4
1,465,948	+		EFB2_01400	0.59	-2.3
1,465,949	-		EFB2_01400	0.59	+2.8
1,465,949	-		EFB2_01400	0.59	-0.9
1,466,049	+		EFB2_01400	0.75	+0.0
1,466,049	+		EFB2_01400	0.75	-0.6
1,466,050	-		EFB2_01400	0.75	+0.5
1,466,050	-		EFB2_01400	0.75	-1.1
1,466,071	+		EFB2_01400	0.79	+0.7
1,466,111	+		EFB2_01400	0.85	+1.0
1,466,111	+		EFB2_01400	0.85	-0.9
1,466,111	+		EFB2_01400	0.85	-2.0
1,466,111	+		EFB2_01400	0.85	-0.0
1,466,111	+		EFB2_01400	0.85	-1.8
1,466,111	+		EFB2_01400	0.85	-0.5
1,466,111	+		EFB2_01400	0.85	+2.0
1,466,111	+		EFB2_01400	0.85	+2.9
1,466,111	+		EFB2_01400	0.85	-0.9
1,466,112	-		EFB2_01400	0.85	+2.6
1,466,112	-		EFB2_01400	0.85	-1.8
1,466,112	-		EFB2_01400	0.85	+0.3
1,466,112	-		EFB2_01400	0.85	+1.0
1,466,112	-		EFB2_01400	0.85	+1.8
1,466,113	+		EFB2_01400	0.85	+0.6
1,466,150	+				+0.1
1,466,150	+				-3.5
1,466,150	+				+1.0
1,466,150	+				-1.9
1,466,150	+				+1.7
1,466,150	+				-0.8
1,466,151	-				+1.2
1,466,151	-				+1.6
1,466,151	-				-2.0
1,466,151	-				-0.5
1,466,151	-				-1.0
1,466,155	+				-0.6
1,466,155	+				-1.8
1,466,155	+				-0.8
1,466,155	+				-1.4
1,466,155	+				-1.0
1,466,155	+				-1.8
1,466,201	+				+0.0
1,466,201	+				+1.2
1,466,201	+				+1.0
1,466,208	+				-2.3
1,466,209	-				+1.5
1,466,209	-				+0.6
1,466,218	+				-1.7
1,466,218	+				+2.6
1,466,219	-				+1.5
1,466,230	+				+0.3
1,466,230	+				-2.7
1,466,230	+				+0.2
1,466,230	+				+0.9
1,466,231	-				+0.4
1,466,231	-				+0.8
1,466,231	-				+1.3
1,466,253	-				-2.6
1,466,253	-				-0.4
1,466,253	-				+0.1
1,466,262	-				+2.5
1,466,262	-				-1.5
1,466,262	-				+0.3
1,466,262	-				+1.5
1,466,262	-				+0.6
1,466,262	-				+1.3
1,466,262	-				+1.7
1,466,263	+				-0.6
1,466,263	+				-0.4
1,466,263	+				-1.2
1,466,263	+				-1.1
1,466,263	+				-1.7
1,466,263	+				-0.7
1,466,263	+				+0.1
1,466,263	+				+0.8
1,466,263	+				+0.8
1,466,263	+				+0.8
1,466,263	+				-0.8
1,466,264	-				-1.8
1,466,264	-				+0.4
1,466,264	-				-0.7
1,466,264	-				+1.2
1,466,264	-				-2.0
1,466,264	-				-0.2
1,466,264	-				-2.0
1,466,270	+				-0.4
1,466,270	+				-0.5
1,466,270	+				-1.0
1,466,270	+				+2.2
1,466,270	+				+0.3
1,466,270	+				-3.1
1,466,270	+				+0.5
1,466,270	+				-0.3
1,466,270	+				+1.0
1,466,270	+				+0.6
1,466,271	-				-0.5
1,466,271	-				-1.1
1,466,271	-				-0.3
1,466,271	-				+1.9
1,466,271	-				-0.4
1,466,271	-				+1.6
1,466,271	-				-0.9
1,466,271	-				-0.2
1,466,271	-				-3.2
1,466,271	-				-0.6
1,466,271	-				+0.5
1,466,271	-				-0.2
1,466,271	-				-4.6
1,466,271	-				-0.1
1,466,273	+				+1.0
1,466,273	+				-2.5
1,466,273	+				+0.5
1,466,273	+				+0.0
1,466,273	+				-0.5
1,466,273	+				-0.5
1,466,273	+				-0.0
1,466,273	+				-1.3
1,466,273	+				+0.4
1,466,273	+				-1.0
1,466,273	+				+0.3
1,466,273	+				+1.0
1,466,273	+				-0.5
1,466,273	+				+0.4
1,466,273	+				+0.1
1,466,273	+				+0.6
1,466,273	+				-1.7
1,466,273	+				-3.2
1,466,274	-				+0.3
1,466,274	-				+0.4
1,466,274	-				-0.1
1,466,274	-				+1.7
1,466,274	-				-1.9
1,466,274	-				+0.8
1,466,274	-				+0.4
1,466,274	-				+2.0
1,466,274	-				-1.6
1,466,274	-				+1.5
1,466,274	-				+0.9
1,466,274	-				+2.0
1,466,274	-				-0.8
1,466,274	-				-2.4
1,466,274	-				+0.2
1,466,274	-				+3.2
1,466,274	-				+0.1
1,466,282	+				-0.3
1,466,285	+				-0.0
1,466,285	+				-0.3
1,466,285	+				+0.9
1,466,285	+				+0.4
1,466,285	+				-0.8
1,466,285	+				-0.5
1,466,285	+				+1.3
1,466,285	+				+0.8
1,466,285	+				-0.3
1,466,285	+				-2.8
1,466,285	+				+1.4
1,466,285	+				-1.5
1,466,285	+				-3.0
1,466,285	+				-1.7
1,466,285	+				-1.0
1,466,285	+				+0.8
1,466,286	-				+0.9
1,466,286	-				+0.0
1,466,286	-				-0.1
1,466,286	-				+0.4
1,466,286	-				-0.3
1,466,286	-				+0.7
1,466,286	-				-2.8
1,466,286	-				-1.9
1,466,286	-				+0.2
1,466,286	-				-3.0
1,466,286	-				+1.0
1,466,286	-				-0.6
1,466,286	-				-1.3
1,466,286	-				+1.8
1,466,286	-				+2.5
1,466,286	-				+0.7
1,466,286	-				-1.2
1,466,286	-				-1.4
1,466,286	-				+0.5
1,466,286	-				-0.3
1,466,286	-				+1.0
1,466,286	-				-0.2
1,466,286	-				-0.9
1,466,286	-				+3.3
1,466,288	+				+1.7
1,466,288	+				+0.5
1,466,288	+				-0.8
1,466,288	+				-0.8
1,466,289	-				-1.8
1,466,289	-				+1.0
1,466,289	-				+0.8
1,466,289	-				+0.5
1,466,289	-				-0.3
1,466,289	-				+0.1
1,466,289	-				+1.3
1,466,289	-				-0.1
1,466,333	-				+0.7
1,466,348	+				+2.0
1,466,348	+				-1.0
1,466,348	+				+1.2
1,466,348	+				-2.1
1,466,349	-				+0.6
1,466,401	+				-1.8
1,466,401	+				+0.8
1,466,402	-				+0.7
1,466,402	-				-0.1
1,466,402	-				+1.1
1,466,402	-				-1.4
1,466,408	+				-0.2
1,466,408	+				+1.4
1,466,409	-				+2.6
1,466,425	+		EFB2_01401	0.11	-0.4
1,466,425	+		EFB2_01401	0.11	-1.8
1,466,425	+		EFB2_01401	0.11	+0.2
1,466,425	+		EFB2_01401	0.11	-0.9
1,466,425	+		EFB2_01401	0.11	+0.1
1,466,425	+		EFB2_01401	0.11	-1.4
1,466,425	+		EFB2_01401	0.11	+0.1
1,466,425	+		EFB2_01401	0.11	-1.2
1,466,425	+		EFB2_01401	0.11	-0.6
1,466,425	+		EFB2_01401	0.11	-0.9
1,466,425	+		EFB2_01401	0.11	-1.3
1,466,426	-		EFB2_01401	0.11	+1.5
1,466,426	-		EFB2_01401	0.11	-0.8
1,466,426	-		EFB2_01401	0.11	+0.5
1,466,426	-		EFB2_01401	0.11	+0.5
1,466,426	-		EFB2_01401	0.11	+0.1
1,466,426	-		EFB2_01401	0.11	-0.6
1,466,431	+		EFB2_01401	0.11	+0.6
1,466,431	+		EFB2_01401	0.11	-1.2
1,466,432	-		EFB2_01401	0.11	-0.5
1,466,432	-		EFB2_01401	0.11	+0.4
1,466,435	+		EFB2_01401	0.11	+1.8
1,466,436	-		EFB2_01401	0.11	-2.0
1,466,436	-		EFB2_01401	0.11	+0.5
1,466,442	-		EFB2_01401	0.12	-0.5
1,466,443	+		EFB2_01401	0.12	-2.5
1,466,443	+		EFB2_01401	0.12	-0.5
1,466,443	+		EFB2_01401	0.12	-3.2
1,466,443	+		EFB2_01401	0.12	+1.7
1,466,443	+		EFB2_01401	0.12	-0.6
1,466,444	-		EFB2_01401	0.12	+0.2
1,466,444	-		EFB2_01401	0.12	+0.5
1,466,457	+		EFB2_01401	0.13	-0.1
1,466,457	+		EFB2_01401	0.13	-0.9
1,466,457	+		EFB2_01401	0.13	+0.3
1,466,457	+		EFB2_01401	0.13	+0.7
1,466,457	+		EFB2_01401	0.13	+0.9
1,466,458	-		EFB2_01401	0.13	+0.4
1,466,458	-		EFB2_01401	0.13	+2.1
1,466,458	-		EFB2_01401	0.13	-0.6
1,466,458	-		EFB2_01401	0.13	-1.4
1,466,458	-		EFB2_01401	0.13	+1.2
1,466,458	-		EFB2_01401	0.13	+1.7
1,466,471	+		EFB2_01401	0.14	-2.5
1,466,490	+		EFB2_01401	0.16	+0.1
1,466,490	+		EFB2_01401	0.16	-1.6
1,466,490	+		EFB2_01401	0.16	+1.0
1,466,490	+		EFB2_01401	0.16	-3.5
1,466,491	-		EFB2_01401	0.16	+0.5
1,466,491	-		EFB2_01401	0.16	+1.3
1,466,513	+		EFB2_01401	0.17	-0.6
1,466,513	+		EFB2_01401	0.17	-1.5
1,466,514	-		EFB2_01401	0.17	-0.5
1,466,530	+		EFB2_01401	0.19	+1.9
1,466,530	+		EFB2_01401	0.19	-0.5
1,466,530	+		EFB2_01401	0.19	+0.6
1,466,530	+		EFB2_01401	0.19	-0.5
1,466,542	+		EFB2_01401	0.20	-0.6
1,466,547	+		EFB2_01401	0.20	+0.4
1,466,547	+		EFB2_01401	0.20	-2.5
1,466,570	+		EFB2_01401	0.22	-0.1
1,466,570	+		EFB2_01401	0.22	+0.8
1,466,570	+		EFB2_01401	0.22	-0.6
1,466,570	+		EFB2_01401	0.22	+1.3
1,466,570	+		EFB2_01401	0.22	+0.1
1,466,570	+		EFB2_01401	0.22	-1.5
1,466,570	+		EFB2_01401	0.22	+0.3
1,466,570	+		EFB2_01401	0.22	-1.3
1,466,570	+		EFB2_01401	0.22	-0.1
1,466,571	-		EFB2_01401	0.22	+0.6
1,466,571	-		EFB2_01401	0.22	+1.3
1,466,571	-		EFB2_01401	0.22	+2.3
1,466,571	-		EFB2_01401	0.22	+1.1
1,466,573	+		EFB2_01401	0.22	-0.4
1,466,573	+		EFB2_01401	0.22	+0.8
1,466,573	+		EFB2_01401	0.22	+0.0
1,466,573	+		EFB2_01401	0.22	+0.2
1,466,573	+		EFB2_01401	0.22	-0.0
1,466,573	+		EFB2_01401	0.22	+1.1
1,466,574	-		EFB2_01401	0.22	+2.6
1,466,574	-		EFB2_01401	0.22	-1.9
1,466,574	-		EFB2_01401	0.22	-1.8
1,466,574	-		EFB2_01401	0.22	+0.0
1,466,574	-		EFB2_01401	0.22	+0.3
1,466,574	-		EFB2_01401	0.22	-0.3
1,466,574	-		EFB2_01401	0.22	-0.0
1,466,606	+		EFB2_01401	0.25	+0.3
1,466,704	+		EFB2_01401	0.32	-0.2
1,466,725	+		EFB2_01401	0.34	-0.5
1,466,774	+		EFB2_01401	0.38	+0.3
1,466,774	+		EFB2_01401	0.38	+2.2
1,466,774	+		EFB2_01401	0.38	-1.6
1,466,774	+		EFB2_01401	0.38	+0.7
1,466,774	+		EFB2_01401	0.38	-0.6
1,466,774	+		EFB2_01401	0.38	-1.6
1,466,774	+		EFB2_01401	0.38	-2.4
1,466,774	+		EFB2_01401	0.38	+0.8
1,466,774	+		EFB2_01401	0.38	+0.2
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