Strain Fitness in Escherichia fergusonii Becca around EFB2_01156

Experiment: BHIS_CaCl2 no phage control with 14 member community

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with 14 member community
1,213,550	+				+0.6
1,213,550	+				-0.2
1,213,550	+				-1.6
1,213,550	+				+0.6
1,213,550	+				+0.8
1,213,550	+				-2.5
1,213,550	+				-2.3
1,213,550	+				-1.2
1,213,550	+				+1.5
1,213,550	+				-1.5
1,213,550	+				+0.6
1,213,550	+				+0.9
1,213,550	+				-1.3
1,213,550	+				+0.9
1,213,550	+				-0.2
1,213,550	+				+0.3
1,213,550	+				+0.5
1,213,550	+				+0.1
1,213,550	+				+2.8
1,213,550	+				-0.1
1,213,550	+				+1.0
1,213,550	+				+0.8
1,213,550	+				+0.3
1,213,550	+				-2.8
1,213,550	+				+0.6
1,213,550	+				+0.3
1,213,551	-				+0.5
1,213,551	-				-1.7
1,213,551	-				-0.5
1,213,551	-				+0.1
1,213,551	-				-0.1
1,213,551	-				+0.6
1,213,551	-				+0.3
1,213,567	+				+1.3
1,213,567	+				-1.8
1,213,567	+				+1.6
1,213,567	+				-0.4
1,213,567	+				+1.6
1,213,568	-				+1.6
1,213,623	-				-0.8
1,213,692	+		EFB2_01155	0.19	-2.8
1,213,692	+		EFB2_01155	0.19	+0.2
1,213,692	+		EFB2_01155	0.19	-0.1
1,213,692	+		EFB2_01155	0.19	+0.2
1,213,692	+		EFB2_01155	0.19	+1.1
1,213,692	+		EFB2_01155	0.19	+0.7
1,213,692	+		EFB2_01155	0.19	-1.1
1,213,692	+		EFB2_01155	0.19	-1.1
1,213,692	+		EFB2_01155	0.19	-2.2
1,213,693	-		EFB2_01155	0.19	+0.3
1,213,693	-		EFB2_01155	0.19	+1.7
1,213,693	-		EFB2_01155	0.19	+1.0
1,213,696	+		EFB2_01155	0.20	+0.1
1,213,696	+		EFB2_01155	0.20	+0.3
1,213,696	+		EFB2_01155	0.20	-1.4
1,213,696	+		EFB2_01155	0.20	-1.0
1,213,696	+		EFB2_01155	0.20	-0.5
1,213,696	+		EFB2_01155	0.20	-2.6
1,213,697	-		EFB2_01155	0.20	-1.8
1,213,697	-		EFB2_01155	0.20	-0.3
1,213,697	-		EFB2_01155	0.20	-1.5
1,213,697	-		EFB2_01155	0.20	-1.1
1,213,697	-		EFB2_01155	0.20	-2.3
1,213,697	-		EFB2_01155	0.20	-0.3
1,213,697	-		EFB2_01155	0.20	+0.1
1,213,697	-		EFB2_01155	0.20	+1.1
1,213,697	-		EFB2_01155	0.20	-2.3
1,213,697	-		EFB2_01155	0.20	+0.6
1,213,697	-		EFB2_01155	0.20	+0.3
1,213,697	-		EFB2_01155	0.20	-2.1
1,213,791	+		EFB2_01155	0.33	-3.3
1,213,792	-		EFB2_01155	0.33	-0.3
1,213,809	+		EFB2_01155	0.35	-1.3
1,213,817	+		EFB2_01155	0.36	+2.1
1,213,828	+		EFB2_01155	0.38	+0.1
1,213,861	-		EFB2_01155	0.42	+1.1
1,213,941	+		EFB2_01155	0.53	-1.5
1,213,942	-		EFB2_01155	0.53	+0.8
1,213,942	-		EFB2_01155	0.53	-1.1
1,213,942	-		EFB2_01155	0.53	+0.1
1,213,942	-		EFB2_01155	0.53	-0.5
1,214,051	-		EFB2_01155	0.68	-2.1
1,214,077	+		EFB2_01155	0.72	+1.3
1,214,077	+		EFB2_01155	0.72	+0.9
1,214,077	+		EFB2_01155	0.72	+0.9
1,214,078	-		EFB2_01155	0.72	-0.3
1,214,081	+		EFB2_01155	0.72	-0.2
1,214,081	+		EFB2_01155	0.72	-0.1
1,214,081	+		EFB2_01155	0.72	+0.3
1,214,082	-		EFB2_01155	0.72	-0.4
1,214,082	-		EFB2_01155	0.72	-1.8
1,214,117	+		EFB2_01155	0.77	+1.6
1,214,117	+		EFB2_01155	0.77	-0.8
1,214,117	+		EFB2_01155	0.77	+2.0
1,214,117	+		EFB2_01155	0.77	-1.9
1,214,117	+		EFB2_01155	0.77	-1.5
1,214,117	+		EFB2_01155	0.77	-0.1
1,214,117	+		EFB2_01155	0.77	+2.8
1,214,118	-		EFB2_01155	0.77	+1.2
1,214,118	-		EFB2_01155	0.77	+1.6
1,214,118	-		EFB2_01155	0.77	-1.9
1,214,118	-		EFB2_01155	0.77	+0.7
1,214,118	-		EFB2_01155	0.77	-1.6
1,214,121	+		EFB2_01155	0.78	+0.5
1,214,121	+		EFB2_01155	0.78	-1.4
1,214,127	+		EFB2_01155	0.78	-2.3
1,214,127	+		EFB2_01155	0.78	-0.1
1,214,127	+		EFB2_01155	0.78	+2.4
1,214,128	-		EFB2_01155	0.79	+0.1
1,214,128	-		EFB2_01155	0.79	+1.5
1,214,151	+		EFB2_01155	0.82	-1.1
1,214,151	+		EFB2_01155	0.82	-0.5
1,214,151	+		EFB2_01155	0.82	-1.6
1,214,151	+		EFB2_01155	0.82	-1.6
1,214,175	+		EFB2_01155	0.85	+0.1
1,214,175	+		EFB2_01155	0.85	-1.4
1,214,175	+		EFB2_01155	0.85	+0.3
1,214,175	+		EFB2_01155	0.85	+0.4
1,214,175	+		EFB2_01155	0.85	-0.5
1,214,175	+		EFB2_01155	0.85	-2.0
1,214,176	-		EFB2_01155	0.85	+0.2
1,214,179	+		EFB2_01155	0.85	+4.6
1,214,180	-		EFB2_01155	0.86	-0.2
1,214,180	-		EFB2_01155	0.86	-0.4
1,214,180	-		EFB2_01155	0.86	+0.5
1,214,198	+		EFB2_01155	0.88	+0.6
1,214,198	+		EFB2_01155	0.88	+0.7
1,214,198	+		EFB2_01155	0.88	+0.2
1,214,198	+		EFB2_01155	0.88	+0.5
1,214,198	+		EFB2_01155	0.88	-1.8
1,214,198	+		EFB2_01155	0.88	-0.3
1,214,198	+		EFB2_01155	0.88	-0.7
1,214,198	+		EFB2_01155	0.88	-1.3
1,214,198	+		EFB2_01155	0.88	+1.0
1,214,199	-		EFB2_01155	0.88	+1.1
1,214,199	-		EFB2_01155	0.88	-2.6
1,214,199	-		EFB2_01155	0.88	-2.3
1,214,199	-		EFB2_01155	0.88	+1.8
1,214,199	-		EFB2_01155	0.88	-0.4
1,214,199	-		EFB2_01155	0.88	-1.7
1,214,199	-		EFB2_01155	0.88	-1.3
1,214,199	-		EFB2_01155	0.88	-1.8
1,214,199	-		EFB2_01155	0.88	-1.8
1,214,199	-		EFB2_01155	0.88	+2.7
1,214,199	-		EFB2_01155	0.88	-2.2
1,214,199	-		EFB2_01155	0.88	+1.4
1,214,207	+		EFB2_01155	0.89	-0.9
1,214,207	+		EFB2_01155	0.89	+0.4
1,214,207	+		EFB2_01155	0.89	+1.9
1,214,273	-				-0.4
1,214,283	+				-0.8
1,214,283	+				+1.3
1,214,284	-				-0.3
1,214,287	+				-0.7
1,214,287	+				+0.1
1,214,287	+				+1.2
1,214,287	+				+0.7
1,214,288	-				+0.2
1,214,288	-				+0.1
1,214,288	-				-2.3
1,214,302	+				-1.5
1,214,361	+				-0.2
1,214,387	+				-0.4
1,214,387	+				-0.8
1,214,387	+				-0.8
1,214,387	+				-0.4
1,214,388	-				-2.2
1,214,394	+				-0.7
1,214,394	+				+0.5
1,214,394	+				-0.1
1,214,394	+				+0.3
1,214,394	+				-0.5
1,214,394	+				+1.8
1,214,395	-				+0.3
1,214,395	-				-0.3
1,214,395	-				+1.1
1,214,395	-				-0.3
1,214,395	-				+1.5
1,214,395	-				-0.4
1,214,395	-				-2.1
1,214,396	+				+1.3
1,214,396	+				-2.3
1,214,396	+				-0.4
1,214,396	+				+0.6
1,214,396	+				+0.3
1,214,396	+				-1.1
1,214,396	+				+2.2
1,214,396	+				+0.3
1,214,396	+				+1.2
1,214,396	+				-3.4
1,214,396	+				+1.6
1,214,396	+				+0.7
1,214,396	+				+0.2
1,214,396	+				-1.0
1,214,396	+				-0.3
1,214,396	+				-1.4
1,214,396	+				+0.2
1,214,396	+				-0.2
1,214,396	+				+0.2
1,214,396	+				-2.3
1,214,396	+				+1.1
1,214,396	+				+2.1
1,214,396	+				+0.4
1,214,396	+				+0.2
1,214,396	+				-1.3
1,214,396	+				-0.5
1,214,396	+				+1.0
1,214,396	+				-2.2
1,214,397	-				+0.5
1,214,397	-				+1.1
1,214,397	-				+0.3
1,214,397	-				-1.8
1,214,397	-				+0.1
1,214,397	-				-0.2
1,214,397	-				-2.7
1,214,397	-				+1.8
1,214,397	-				-1.6
1,214,397	-				-0.9
1,214,397	-				-1.6
1,214,397	-				-1.4
1,214,397	-				+1.3
1,214,397	-				-2.5
1,214,397	-				+0.8
1,214,397	-				-1.0
1,214,397	-				-0.3
1,214,397	-				-1.7
1,214,397	-				-0.2
1,214,397	-				-1.4
1,214,397	-				-1.1
1,214,397	-				-0.9
1,214,397	-				+0.3
1,214,397	-				-1.5
1,214,397	-				-0.9
1,214,397	-				-1.4
1,214,473	+				-0.9
1,214,473	+				+0.9
1,214,479	+				+0.8
1,214,479	+				+0.7
1,214,479	+				+0.0
1,214,479	+				-0.2
1,214,479	+				-1.3
1,214,480	-				-0.9
1,214,480	-				-0.7
1,214,480	-				-0.1
1,214,480	-				-0.7
1,214,506	+				-0.9
1,214,506	+				-0.2
1,214,506	+				-1.7
1,214,507	-				+0.3
1,214,507	-				+0.6
1,214,507	-				+0.3
1,214,507	-				+0.0
1,214,521	+				+0.1
1,214,521	+				-1.6
1,214,521	+				+0.4
1,214,521	+				+0.3
1,214,521	+				-0.8
1,214,521	+				+0.3
1,214,522	-				+0.4
1,214,522	-				-3.2
1,214,522	-				-0.1
1,214,522	-				-0.7
1,214,561	+				-0.4
1,214,561	+				+1.9
1,214,561	+				-0.2
1,214,562	-				+0.2
1,214,583	+		EFB2_01156	0.22	+0.9
1,214,583	+		EFB2_01156	0.22	+0.8
1,214,583	+		EFB2_01156	0.22	-1.5
1,214,583	+		EFB2_01156	0.22	-1.3
1,214,583	+		EFB2_01156	0.22	+0.5
1,214,584	-		EFB2_01156	0.23	-2.0
1,214,584	-		EFB2_01156	0.23	-0.1
1,214,593	+		EFB2_01156	0.29	-2.1
1,214,593	+		EFB2_01156	0.29	-2.4
1,214,593	+		EFB2_01156	0.29	+1.7
1,214,593	+		EFB2_01156	0.29	+0.6
1,214,593	+		EFB2_01156	0.29	-0.8
1,214,593	+		EFB2_01156	0.29	-0.6
1,214,593	+		EFB2_01156	0.29	+0.2
1,214,593	+		EFB2_01156	0.29	+0.3
1,214,593	+		EFB2_01156	0.29	-0.9
1,214,593	+		EFB2_01156	0.29	-1.2
1,214,593	+		EFB2_01156	0.29	-0.9
1,214,594	-		EFB2_01156	0.29	-0.6
1,214,594	-		EFB2_01156	0.29	-2.1
1,214,594	-		EFB2_01156	0.29	-0.2
1,214,594	-		EFB2_01156	0.29	-1.7
1,214,594	-		EFB2_01156	0.29	+1.4
1,214,594	-		EFB2_01156	0.29	+0.5
1,214,594	-		EFB2_01156	0.29	-0.6
1,214,594	-		EFB2_01156	0.29	-0.5
1,214,594	-		EFB2_01156	0.29	-0.1
1,214,594	-		EFB2_01156	0.29	-0.1
1,214,594	-		EFB2_01156	0.29	+2.1
1,214,594	-		EFB2_01156	0.29	-0.0
1,214,599	-		EFB2_01156	0.33	+0.0
1,214,620	-		EFB2_01156	0.46	-1.4
1,214,645	-		EFB2_01156	0.63	-0.4
1,214,645	-		EFB2_01156	0.63	+0.6
1,214,660	-		EFB2_01156	0.73	-0.4
1,214,660	-		EFB2_01156	0.73	-2.3
1,214,668	+		EFB2_01156	0.78	-0.2
1,214,685	-		EFB2_01156	0.89	+0.1
1,214,685	-		EFB2_01156	0.89	+0.1
1,214,699	+				-2.1
1,214,699	+				-1.6
1,214,700	-				+1.4
1,214,700	-				-0.8
1,214,700	-				-0.9
1,214,700	-				+0.2
1,214,700	-				-0.6
1,214,700	-				+1.7
1,214,715	+				+0.1
1,214,728	-				+1.0
1,214,765	+				+0.0
1,214,765	+				-1.9
1,214,766	-				-0.3
1,214,766	-				-0.0
1,214,767	+				+0.2
1,214,767	+				+1.1
1,214,768	-				+0.6
1,214,809	+				+0.3
1,214,809	+				-1.7
1,214,809	+				+0.3
1,214,810	-				+2.4
1,214,810	-				-1.2
1,214,810	-				-0.4
1,214,827	+				-1.9
1,214,827	+				+0.6
1,214,827	+				+1.2
1,214,827	+				+0.0
1,214,828	-				-0.4
1,214,828	-				-0.1
1,214,860	-				+0.8
1,214,860	-				+0.5
1,214,860	-				+0.1
1,214,874	-				-0.7
1,214,874	-				+0.6
1,214,895	+				-0.8
1,214,895	+				-1.9
1,214,895	+				+0.4
1,214,895	+				+0.8
1,214,895	+				+0.3
1,214,895	+				-3.1
1,214,895	+				+0.5
1,214,895	+				-0.2
1,214,896	-				+1.0
1,214,896	-				-1.7
1,214,896	-				-1.1
1,214,896	-				-0.7
1,214,896	-				+0.9
1,214,896	-				+0.5
1,214,896	-				+2.3
1,214,916	-				-0.4
1,214,921	+				+1.0
1,214,921	+				-2.7
1,214,921	+				-0.3
1,214,921	+				-2.9
1,214,922	-				-0.3
1,214,922	-				-2.6
1,214,922	-				+0.5
1,214,922	-				-0.5
1,214,922	-				-0.7
1,214,922	-				-1.3
1,214,943	+		EFB2_01157	0.11	-1.0
1,214,943	+		EFB2_01157	0.11	-1.3
1,214,943	+		EFB2_01157	0.11	-1.2
1,214,944	-		EFB2_01157	0.11	-2.5
1,214,944	-		EFB2_01157	0.11	-0.7
1,214,944	-		EFB2_01157	0.11	-1.7
1,214,944	-		EFB2_01157	0.11	-0.8
1,214,957	+		EFB2_01157	0.13	+0.9
1,214,957	+		EFB2_01157	0.13	+0.7
1,214,958	-		EFB2_01157	0.13	+1.0
1,214,999	-		EFB2_01157	0.17	-0.2
1,214,999	-		EFB2_01157	0.17	-0.7
1,215,008	+		EFB2_01157	0.18	+0.5
1,215,008	+		EFB2_01157	0.18	+0.3
1,215,008	+		EFB2_01157	0.18	+0.2
1,215,009	-		EFB2_01157	0.18	-2.5
1,215,027	-		EFB2_01157	0.19	+0.9
1,215,027	-		EFB2_01157	0.19	-0.2
1,215,046	-		EFB2_01157	0.21	+0.6
1,215,053	+		EFB2_01157	0.22	-0.9
1,215,054	-		EFB2_01157	0.22	+0.8
1,215,083	+		EFB2_01157	0.25	+0.6
1,215,083	+		EFB2_01157	0.25	-2.9
1,215,084	-		EFB2_01157	0.25	-0.6
1,215,084	-		EFB2_01157	0.25	-1.1
1,215,084	-		EFB2_01157	0.25	-1.4
1,215,184	-		EFB2_01157	0.34	+1.1
1,215,227	-		EFB2_01157	0.39	+1.0
1,215,227	-		EFB2_01157	0.39	-0.5
1,215,227	-		EFB2_01157	0.39	+0.2
1,215,227	-		EFB2_01157	0.39	-2.0
1,215,227	-		EFB2_01157	0.39	+1.1
1,215,234	-		EFB2_01157	0.39	+1.1
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