Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02829

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02827 and MPMX26_02828 are separated by 56 nucleotidesMPMX26_02828 and MPMX26_02829 are separated by 33 nucleotidesMPMX26_02829 and MPMX26_02830 are separated by 106 nucleotidesMPMX26_02830 and MPMX26_02831 are separated by 13 nucleotides MPMX26_02827: MPMX26_02827 - Glutamate--tRNA ligase, at 2,916,229 to 2,917,740 _02827 MPMX26_02828: MPMX26_02828 - tRNA-Ala, at 2,917,797 to 2,917,872 _02828 MPMX26_02829: MPMX26_02829 - tRNA-Glu, at 2,917,906 to 2,917,981 _02829 MPMX26_02830: MPMX26_02830 - hypothetical protein, at 2,918,088 to 2,918,426 _02830 MPMX26_02831: MPMX26_02831 - Metal cation efflux system protein CzcD, at 2,918,440 to 2,919,366 _02831 Position (kb) 2917 2918Strain fitness (log2 ratio) -2 -1 0 1 2at 2917.727 kb on + strandat 2917.761 kb on + strandat 2917.770 kb on + strandat 2917.787 kb on + strandat 2917.793 kb on + strandat 2917.793 kb on + strandat 2917.799 kb on + strandat 2917.799 kb on + strandat 2917.799 kb on + strandat 2917.806 kb on + strand, within MPMX26_02828at 2917.809 kb on + strand, within MPMX26_02828at 2917.831 kb on + strand, within MPMX26_02828at 2917.831 kb on + strand, within MPMX26_02828at 2917.836 kb on + strand, within MPMX26_02828at 2917.836 kb on + strand, within MPMX26_02828at 2917.841 kb on + strand, within MPMX26_02828at 2917.841 kb on + strand, within MPMX26_02828at 2917.857 kb on + strand, within MPMX26_02828at 2917.869 kb on + strandat 2917.879 kb on + strandat 2917.879 kb on + strandat 2917.879 kb on + strandat 2917.958 kb on + strand, within MPMX26_02829at 2917.958 kb on + strand, within MPMX26_02829at 2917.958 kb on + strand, within MPMX26_02829at 2917.993 kb on + strandat 2917.993 kb on + strandat 2917.993 kb on + strandat 2917.998 kb on + strandat 2917.998 kb on + strandat 2917.998 kb on + strandat 2917.998 kb on + strandat 2917.998 kb on + strandat 2918.000 kb on + strandat 2918.118 kb on + strandat 2918.123 kb on + strand, within MPMX26_02830at 2918.123 kb on + strand, within MPMX26_02830at 2918.123 kb on + strand, within MPMX26_02830at 2918.130 kb on + strand, within MPMX26_02830at 2918.153 kb on + strand, within MPMX26_02830at 2918.216 kb on + strand, within MPMX26_02830at 2918.220 kb on + strand, within MPMX26_02830at 2918.230 kb on + strand, within MPMX26_02830at 2918.230 kb on + strand, within MPMX26_02830at 2918.259 kb on + strand, within MPMX26_02830at 2918.261 kb on + strand, within MPMX26_02830at 2918.261 kb on + strand, within MPMX26_02830at 2918.344 kb on + strand, within MPMX26_02830at 2918.344 kb on + strand, within MPMX26_02830at 2918.344 kb on + strand, within MPMX26_02830at 2918.344 kb on + strand, within MPMX26_02830at 2918.344 kb on + strand, within MPMX26_02830at 2918.345 kb on + strand, within MPMX26_02830at 2918.395 kb on + strandat 2918.395 kb on + strandat 2918.395 kb on + strandat 2918.420 kb on + strandat 2918.449 kb on + strandat 2918.451 kb on + strandat 2918.470 kb on + strandat 2918.489 kb on + strandat 2918.489 kb on + strandat 2918.532 kb on + strandat 2918.532 kb on + strandat 2918.539 kb on + strand, within MPMX26_02831at 2918.649 kb on + strand, within MPMX26_02831at 2918.667 kb on - strand, within MPMX26_02831at 2918.826 kb on - strand, within MPMX26_02831

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,917,727 + -0.9
2,917,761 + -0.3
2,917,770 + -0.7
2,917,787 + +0.4
2,917,793 + -0.5
2,917,793 + +0.6
2,917,799 + -0.4
2,917,799 + -0.2
2,917,799 + +1.0
2,917,806 + MPMX26_02828 0.12 +0.8
2,917,809 + MPMX26_02828 0.16 -0.5
2,917,831 + MPMX26_02828 0.45 +0.0
2,917,831 + MPMX26_02828 0.45 -0.1
2,917,836 + MPMX26_02828 0.51 -0.2
2,917,836 + MPMX26_02828 0.51 -0.2
2,917,841 + MPMX26_02828 0.58 +0.1
2,917,841 + MPMX26_02828 0.58 +0.0
2,917,857 + MPMX26_02828 0.79 +0.6
2,917,869 + -1.4
2,917,879 + -1.0
2,917,879 + -1.8
2,917,879 + +0.2
2,917,958 + MPMX26_02829 0.68 -0.8
2,917,958 + MPMX26_02829 0.68 -0.1
2,917,958 + MPMX26_02829 0.68 -1.6
2,917,993 + -1.1
2,917,993 + -1.1
2,917,993 + -0.3
2,917,998 + -1.2
2,917,998 + +0.0
2,917,998 + -0.5
2,917,998 + -1.0
2,917,998 + +0.1
2,918,000 + -0.1
2,918,118 + -0.6
2,918,123 + MPMX26_02830 0.10 -0.6
2,918,123 + MPMX26_02830 0.10 -0.3
2,918,123 + MPMX26_02830 0.10 -1.3
2,918,130 + MPMX26_02830 0.12 +2.4
2,918,153 + MPMX26_02830 0.19 +0.6
2,918,216 + MPMX26_02830 0.38 -0.1
2,918,220 + MPMX26_02830 0.39 -0.2
2,918,230 + MPMX26_02830 0.42 +2.0
2,918,230 + MPMX26_02830 0.42 +0.8
2,918,259 + MPMX26_02830 0.50 -0.1
2,918,261 + MPMX26_02830 0.51 -0.1
2,918,261 + MPMX26_02830 0.51 -0.7
2,918,344 + MPMX26_02830 0.76 -0.1
2,918,344 + MPMX26_02830 0.76 +1.0
2,918,344 + MPMX26_02830 0.76 -0.5
2,918,344 + MPMX26_02830 0.76 -0.8
2,918,344 + MPMX26_02830 0.76 -0.3
2,918,345 + MPMX26_02830 0.76 -0.6
2,918,395 + -0.3
2,918,395 + +0.2
2,918,395 + -0.3
2,918,420 + -0.1
2,918,449 + +0.1
2,918,451 + -0.2
2,918,470 + +0.3
2,918,489 + +0.1
2,918,489 + -0.3
2,918,532 + -1.2
2,918,532 + +0.4
2,918,539 + MPMX26_02831 0.11 +0.0
2,918,649 + MPMX26_02831 0.23 +1.0
2,918,667 - MPMX26_02831 0.24 +1.1
2,918,826 - MPMX26_02831 0.42 +0.7

Or see this region's nucleotide sequence