Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01894

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01892 and MPMX26_01893 are separated by 11 nucleotidesMPMX26_01893 and MPMX26_01894 overlap by 8 nucleotidesMPMX26_01894 and MPMX26_01895 are separated by 16 nucleotidesMPMX26_01895 and MPMX26_01896 are separated by 27 nucleotidesMPMX26_01896 and MPMX26_01897 are separated by 253 nucleotides MPMX26_01892: MPMX26_01892 - hypothetical protein, at 1,935,090 to 1,936,019 _01892 MPMX26_01893: MPMX26_01893 - Cyclopentanol dehydrogenase, at 1,936,031 to 1,936,795 _01893 MPMX26_01894: MPMX26_01894 - hypothetical protein, at 1,936,788 to 1,937,855 _01894 MPMX26_01895: MPMX26_01895 - hypothetical protein, at 1,937,872 to 1,938,171 _01895 MPMX26_01896: MPMX26_01896 - Naphthalene 1,2-dioxygenase system, ferredoxin component, at 1,938,199 to 1,938,504 _01896 MPMX26_01897: MPMX26_01897 - hypothetical protein, at 1,938,758 to 1,939,570 _01897 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -1 0 1at 1937.599 kb on - strand, within MPMX26_01894at 1938.772 kb on + strandat 1938.772 kb on + strandat 1938.782 kb on + strandat 1938.782 kb on + strandat 1938.783 kb on + strandat 1938.790 kb on + strandat 1938.830 kb on + strandat 1938.830 kb on + strandat 1938.835 kb on + strandat 1938.836 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,937,599 - MPMX26_01894 0.76 -0.0
1,938,772 + +1.1
1,938,772 + -0.2
1,938,782 + +0.0
1,938,782 + -1.2
1,938,783 + +0.7
1,938,790 + -0.3
1,938,830 + -0.5
1,938,830 + +0.5
1,938,835 + -1.0
1,938,836 + -1.3

Or see this region's nucleotide sequence