Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_01892 and MPMX26_01893 are separated by 11 nucleotides MPMX26_01893 and MPMX26_01894 overlap by 8 nucleotides MPMX26_01894 and MPMX26_01895 are separated by 16 nucleotides MPMX26_01895 and MPMX26_01896 are separated by 27 nucleotides MPMX26_01896 and MPMX26_01897 are separated by 253 nucleotides
MPMX26_01892: MPMX26_01892 - hypothetical protein, at 1,935,090 to 1,936,019
_01892
MPMX26_01893: MPMX26_01893 - Cyclopentanol dehydrogenase, at 1,936,031 to 1,936,795
_01893
MPMX26_01894: MPMX26_01894 - hypothetical protein, at 1,936,788 to 1,937,855
_01894
MPMX26_01895: MPMX26_01895 - hypothetical protein, at 1,937,872 to 1,938,171
_01895
MPMX26_01896: MPMX26_01896 - Naphthalene 1,2-dioxygenase system, ferredoxin component, at 1,938,199 to 1,938,504
_01896
MPMX26_01897: MPMX26_01897 - hypothetical protein, at 1,938,758 to 1,939,570
_01897
Position (kb)
1936
1937
1938 Strain fitness (log2 ratio)
-1
0
1 at 1937.599 kb on - strand, within MPMX26_01894 at 1938.772 kb on + strand at 1938.772 kb on + strand at 1938.782 kb on + strand at 1938.782 kb on + strand at 1938.783 kb on + strand at 1938.790 kb on + strand at 1938.830 kb on + strand at 1938.830 kb on + strand at 1938.835 kb on + strand at 1938.836 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,937,599 - MPMX26_01894 0.76 -0.0 1,938,772 + +1.1 1,938,772 + -0.2 1,938,782 + +0.0 1,938,782 + -1.2 1,938,783 + +0.7 1,938,790 + -0.3 1,938,830 + -0.5 1,938,830 + +0.5 1,938,835 + -1.0 1,938,836 + -1.3
Or see this region's nucleotide sequence