Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01029

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01027 and MPMX26_01028 are separated by 73 nucleotidesMPMX26_01028 and MPMX26_01029 are separated by 175 nucleotidesMPMX26_01029 and MPMX26_01030 are separated by 137 nucleotides MPMX26_01027: MPMX26_01027 - RNA polymerase-associated protein RapA, at 1,085,265 to 1,088,093 _01027 MPMX26_01028: MPMX26_01028 - hypothetical protein, at 1,088,167 to 1,088,556 _01028 MPMX26_01029: MPMX26_01029 - HTH-type transcriptional repressor FabR, at 1,088,732 to 1,089,427 _01029 MPMX26_01030: MPMX26_01030 - NADPH oxidoreductase, at 1,089,565 to 1,090,620 _01030 Position (kb) 1088 1089 1090Strain fitness (log2 ratio) -3 -2 -1 0 1at 1087.795 kb on + strand, within MPMX26_01027at 1087.814 kb on + strandat 1087.837 kb on + strandat 1087.873 kb on + strandat 1087.883 kb on + strandat 1087.964 kb on + strandat 1087.985 kb on + strandat 1088.017 kb on + strandat 1088.022 kb on + strandat 1088.022 kb on + strandat 1088.041 kb on + strandat 1088.042 kb on + strandat 1088.048 kb on + strandat 1088.717 kb on - strandat 1088.763 kb on - strandat 1088.863 kb on - strand, within MPMX26_01029at 1088.899 kb on - strand, within MPMX26_01029at 1088.917 kb on - strand, within MPMX26_01029at 1088.941 kb on - strand, within MPMX26_01029at 1088.941 kb on - strand, within MPMX26_01029at 1089.016 kb on - strand, within MPMX26_01029at 1089.016 kb on - strand, within MPMX26_01029at 1089.016 kb on - strand, within MPMX26_01029at 1089.016 kb on - strand, within MPMX26_01029at 1089.016 kb on - strand, within MPMX26_01029at 1089.016 kb on - strand, within MPMX26_01029at 1089.016 kb on - strand, within MPMX26_01029at 1089.016 kb on - strand, within MPMX26_01029at 1089.016 kb on - strand, within MPMX26_01029at 1089.016 kb on - strand, within MPMX26_01029at 1089.016 kb on - strand, within MPMX26_01029at 1089.043 kb on - strand, within MPMX26_01029at 1089.074 kb on - strand, within MPMX26_01029at 1089.091 kb on - strand, within MPMX26_01029at 1089.101 kb on - strand, within MPMX26_01029at 1089.119 kb on - strand, within MPMX26_01029at 1089.119 kb on - strand, within MPMX26_01029at 1089.119 kb on - strand, within MPMX26_01029at 1089.121 kb on - strand, within MPMX26_01029at 1089.121 kb on - strand, within MPMX26_01029at 1089.153 kb on - strand, within MPMX26_01029at 1089.160 kb on - strand, within MPMX26_01029at 1089.167 kb on - strand, within MPMX26_01029at 1089.177 kb on - strand, within MPMX26_01029at 1089.308 kb on - strand, within MPMX26_01029at 1089.395 kb on - strandat 1089.402 kb on - strandat 1089.402 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,087,795 + MPMX26_01027 0.89 +1.4
1,087,814 + +1.0
1,087,837 + +0.5
1,087,873 + +1.1
1,087,883 + +0.9
1,087,964 + +0.7
1,087,985 + +1.5
1,088,017 + +1.1
1,088,022 + +0.1
1,088,022 + +0.2
1,088,041 + +1.2
1,088,042 + +0.5
1,088,048 + +0.1
1,088,717 - +1.7
1,088,763 - -0.6
1,088,863 - MPMX26_01029 0.19 -2.8
1,088,899 - MPMX26_01029 0.24 -2.0
1,088,917 - MPMX26_01029 0.27 -2.4
1,088,941 - MPMX26_01029 0.30 -2.0
1,088,941 - MPMX26_01029 0.30 -1.3
1,089,016 - MPMX26_01029 0.41 +0.2
1,089,016 - MPMX26_01029 0.41 -0.1
1,089,016 - MPMX26_01029 0.41 -0.6
1,089,016 - MPMX26_01029 0.41 -1.0
1,089,016 - MPMX26_01029 0.41 +0.6
1,089,016 - MPMX26_01029 0.41 -0.8
1,089,016 - MPMX26_01029 0.41 -0.1
1,089,016 - MPMX26_01029 0.41 -0.3
1,089,016 - MPMX26_01029 0.41 -1.7
1,089,016 - MPMX26_01029 0.41 -1.2
1,089,016 - MPMX26_01029 0.41 -1.1
1,089,043 - MPMX26_01029 0.45 -2.6
1,089,074 - MPMX26_01029 0.49 -2.3
1,089,091 - MPMX26_01029 0.52 +0.1
1,089,101 - MPMX26_01029 0.53 -0.7
1,089,119 - MPMX26_01029 0.56 +0.3
1,089,119 - MPMX26_01029 0.56 -0.2
1,089,119 - MPMX26_01029 0.56 -1.1
1,089,121 - MPMX26_01029 0.56 +0.6
1,089,121 - MPMX26_01029 0.56 -0.8
1,089,153 - MPMX26_01029 0.60 -1.0
1,089,160 - MPMX26_01029 0.61 -2.2
1,089,167 - MPMX26_01029 0.62 -0.2
1,089,177 - MPMX26_01029 0.64 +0.6
1,089,308 - MPMX26_01029 0.83 -1.5
1,089,395 - -2.4
1,089,402 - +0.6
1,089,402 - -0.2

Or see this region's nucleotide sequence