Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00428

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00426 and MPMX26_00427 are separated by 24 nucleotidesMPMX26_00427 and MPMX26_00428 overlap by 10 nucleotidesMPMX26_00428 and MPMX26_00429 are separated by 22 nucleotides MPMX26_00426: MPMX26_00426 - Dual-specificity RNA methyltransferase RlmN, at 457,450 to 458,685 _00426 MPMX26_00427: MPMX26_00427 - Lipopolysaccharide assembly protein B, at 458,710 to 459,513 _00427 MPMX26_00428: MPMX26_00428 - Cytoskeleton protein RodZ, at 459,504 to 460,307 _00428 MPMX26_00429: MPMX26_00429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 460,330 to 461,445 _00429 Position (kb) 459 460 461Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 458.533 kb on + strand, within MPMX26_00426at 458.533 kb on + strand, within MPMX26_00426at 458.541 kb on + strand, within MPMX26_00426at 458.551 kb on + strand, within MPMX26_00426at 458.556 kb on + strand, within MPMX26_00426at 458.566 kb on + strandat 458.570 kb on + strandat 458.596 kb on + strandat 458.603 kb on + strandat 458.624 kb on + strandat 458.624 kb on + strandat 458.624 kb on + strandat 458.624 kb on + strandat 458.624 kb on + strandat 458.624 kb on + strandat 458.624 kb on + strandat 458.624 kb on + strandat 458.624 kb on + strandat 458.675 kb on + strandat 458.675 kb on + strandat 458.675 kb on + strandat 458.675 kb on + strandat 458.691 kb on + strandat 458.699 kb on + strandat 458.699 kb on + strandat 458.724 kb on + strandat 458.788 kb on + strandat 458.788 kb on + strandat 458.788 kb on + strandat 458.788 kb on + strandat 458.867 kb on + strand, within MPMX26_00427at 458.878 kb on + strand, within MPMX26_00427at 458.902 kb on + strand, within MPMX26_00427at 458.942 kb on + strand, within MPMX26_00427at 458.944 kb on + strand, within MPMX26_00427at 458.952 kb on + strand, within MPMX26_00427at 458.952 kb on + strand, within MPMX26_00427at 458.961 kb on + strand, within MPMX26_00427at 458.977 kb on + strand, within MPMX26_00427at 458.994 kb on + strand, within MPMX26_00427at 459.062 kb on + strand, within MPMX26_00427at 459.072 kb on + strand, within MPMX26_00427at 459.072 kb on + strand, within MPMX26_00427at 459.121 kb on + strand, within MPMX26_00427at 459.121 kb on + strand, within MPMX26_00427at 459.128 kb on + strand, within MPMX26_00427at 459.138 kb on + strand, within MPMX26_00427at 459.138 kb on + strand, within MPMX26_00427at 459.138 kb on + strand, within MPMX26_00427at 459.140 kb on + strand, within MPMX26_00427at 459.223 kb on + strand, within MPMX26_00427at 459.253 kb on + strand, within MPMX26_00427at 459.299 kb on + strand, within MPMX26_00427at 459.299 kb on + strand, within MPMX26_00427at 459.299 kb on + strand, within MPMX26_00427at 459.301 kb on + strand, within MPMX26_00427at 459.301 kb on + strand, within MPMX26_00427at 459.309 kb on + strand, within MPMX26_00427at 459.332 kb on + strand, within MPMX26_00427at 459.332 kb on + strand, within MPMX26_00427at 459.332 kb on + strand, within MPMX26_00427at 459.332 kb on + strand, within MPMX26_00427at 459.332 kb on + strand, within MPMX26_00427at 459.337 kb on + strand, within MPMX26_00427at 459.337 kb on + strand, within MPMX26_00427at 459.345 kb on + strand, within MPMX26_00427at 459.351 kb on + strand, within MPMX26_00427at 459.364 kb on + strand, within MPMX26_00427at 459.410 kb on + strand, within MPMX26_00427at 459.455 kb on + strandat 459.455 kb on + strandat 459.545 kb on + strandat 459.545 kb on + strandat 459.702 kb on + strand, within MPMX26_00428at 459.707 kb on + strand, within MPMX26_00428at 459.707 kb on + strand, within MPMX26_00428at 459.729 kb on + strand, within MPMX26_00428at 459.839 kb on + strand, within MPMX26_00428at 459.839 kb on + strand, within MPMX26_00428at 459.839 kb on + strand, within MPMX26_00428at 459.839 kb on + strand, within MPMX26_00428at 459.839 kb on + strand, within MPMX26_00428at 459.876 kb on + strand, within MPMX26_00428at 459.927 kb on + strand, within MPMX26_00428at 459.956 kb on + strand, within MPMX26_00428at 459.966 kb on + strand, within MPMX26_00428at 459.966 kb on + strand, within MPMX26_00428at 459.966 kb on + strand, within MPMX26_00428at 459.966 kb on + strand, within MPMX26_00428at 460.011 kb on + strand, within MPMX26_00428at 460.011 kb on + strand, within MPMX26_00428at 460.011 kb on + strand, within MPMX26_00428at 460.012 kb on + strand, within MPMX26_00428at 460.012 kb on + strand, within MPMX26_00428at 460.044 kb on + strand, within MPMX26_00428at 460.046 kb on + strand, within MPMX26_00428at 460.052 kb on + strand, within MPMX26_00428at 460.072 kb on + strand, within MPMX26_00428at 460.075 kb on + strand, within MPMX26_00428at 460.103 kb on + strand, within MPMX26_00428at 460.134 kb on + strand, within MPMX26_00428at 460.134 kb on + strand, within MPMX26_00428at 460.140 kb on + strand, within MPMX26_00428at 460.145 kb on + strand, within MPMX26_00428at 460.155 kb on + strand, within MPMX26_00428at 460.160 kb on + strand, within MPMX26_00428at 460.160 kb on + strand, within MPMX26_00428at 460.189 kb on + strand, within MPMX26_00428at 460.189 kb on + strand, within MPMX26_00428at 460.189 kb on + strand, within MPMX26_00428at 460.194 kb on + strand, within MPMX26_00428at 460.222 kb on + strand, within MPMX26_00428at 460.222 kb on + strand, within MPMX26_00428at 460.224 kb on + strand, within MPMX26_00428at 460.224 kb on + strand, within MPMX26_00428at 460.224 kb on + strand, within MPMX26_00428at 460.234 kb on + strandat 460.234 kb on + strandat 460.310 kb on + strandat 460.314 kb on + strandat 460.315 kb on + strandat 460.315 kb on + strandat 460.315 kb on + strandat 460.315 kb on + strandat 460.315 kb on + strandat 460.315 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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458,533 + MPMX26_00426 0.88 -0.4
458,533 + MPMX26_00426 0.88 +0.0
458,541 + MPMX26_00426 0.88 -0.8
458,551 + MPMX26_00426 0.89 -0.9
458,556 + MPMX26_00426 0.89 -0.5
458,566 + -1.5
458,570 + -0.0
458,596 + +0.7
458,603 + -1.4
458,624 + -0.8
458,624 + -1.8
458,624 + -0.2
458,624 + -1.7
458,624 + -0.2
458,624 + -0.8
458,624 + -1.7
458,624 + -0.8
458,624 + -0.4
458,675 + -0.6
458,675 + -2.2
458,675 + -0.5
458,675 + -0.4
458,691 + -0.3
458,699 + +0.6
458,699 + +0.4
458,724 + -1.6
458,788 + -0.4
458,788 + -1.0
458,788 + -0.4
458,788 + -0.7
458,867 + MPMX26_00427 0.20 -0.3
458,878 + MPMX26_00427 0.21 -0.8
458,902 + MPMX26_00427 0.24 +0.3
458,942 + MPMX26_00427 0.29 -0.7
458,944 + MPMX26_00427 0.29 -0.4
458,952 + MPMX26_00427 0.30 +0.4
458,952 + MPMX26_00427 0.30 -0.3
458,961 + MPMX26_00427 0.31 -1.1
458,977 + MPMX26_00427 0.33 -1.1
458,994 + MPMX26_00427 0.35 -1.0
459,062 + MPMX26_00427 0.44 -0.2
459,072 + MPMX26_00427 0.45 -0.9
459,072 + MPMX26_00427 0.45 -0.9
459,121 + MPMX26_00427 0.51 -0.0
459,121 + MPMX26_00427 0.51 +0.3
459,128 + MPMX26_00427 0.52 -0.5
459,138 + MPMX26_00427 0.53 -0.2
459,138 + MPMX26_00427 0.53 -0.9
459,138 + MPMX26_00427 0.53 -0.1
459,140 + MPMX26_00427 0.53 -1.1
459,223 + MPMX26_00427 0.64 -0.4
459,253 + MPMX26_00427 0.68 -0.7
459,299 + MPMX26_00427 0.73 -0.9
459,299 + MPMX26_00427 0.73 -0.1
459,299 + MPMX26_00427 0.73 +0.3
459,301 + MPMX26_00427 0.74 -2.4
459,301 + MPMX26_00427 0.74 +0.5
459,309 + MPMX26_00427 0.75 +0.3
459,332 + MPMX26_00427 0.77 -0.5
459,332 + MPMX26_00427 0.77 -0.9
459,332 + MPMX26_00427 0.77 +0.2
459,332 + MPMX26_00427 0.77 -0.9
459,332 + MPMX26_00427 0.77 -0.2
459,337 + MPMX26_00427 0.78 -0.5
459,337 + MPMX26_00427 0.78 -0.6
459,345 + MPMX26_00427 0.79 -1.7
459,351 + MPMX26_00427 0.80 -0.5
459,364 + MPMX26_00427 0.81 +0.3
459,410 + MPMX26_00427 0.87 -1.5
459,455 + +2.0
459,455 + +0.8
459,545 + +1.0
459,545 + +1.6
459,702 + MPMX26_00428 0.25 +0.4
459,707 + MPMX26_00428 0.25 +0.2
459,707 + MPMX26_00428 0.25 +2.0
459,729 + MPMX26_00428 0.28 +2.2
459,839 + MPMX26_00428 0.42 +1.6
459,839 + MPMX26_00428 0.42 -0.0
459,839 + MPMX26_00428 0.42 -0.6
459,839 + MPMX26_00428 0.42 -0.8
459,839 + MPMX26_00428 0.42 +1.6
459,876 + MPMX26_00428 0.46 +0.8
459,927 + MPMX26_00428 0.53 -0.1
459,956 + MPMX26_00428 0.56 -0.9
459,966 + MPMX26_00428 0.57 +0.6
459,966 + MPMX26_00428 0.57 +1.3
459,966 + MPMX26_00428 0.57 +1.2
459,966 + MPMX26_00428 0.57 -0.0
460,011 + MPMX26_00428 0.63 +0.6
460,011 + MPMX26_00428 0.63 +0.2
460,011 + MPMX26_00428 0.63 -0.4
460,012 + MPMX26_00428 0.63 +1.6
460,012 + MPMX26_00428 0.63 +3.0
460,044 + MPMX26_00428 0.67 -1.4
460,046 + MPMX26_00428 0.67 -0.2
460,052 + MPMX26_00428 0.68 -0.0
460,072 + MPMX26_00428 0.71 +1.6
460,075 + MPMX26_00428 0.71 +0.8
460,103 + MPMX26_00428 0.75 -1.8
460,134 + MPMX26_00428 0.78 -2.0
460,134 + MPMX26_00428 0.78 -0.5
460,140 + MPMX26_00428 0.79 -0.5
460,145 + MPMX26_00428 0.80 -0.5
460,155 + MPMX26_00428 0.81 -0.6
460,160 + MPMX26_00428 0.82 -0.0
460,160 + MPMX26_00428 0.82 +0.4
460,189 + MPMX26_00428 0.85 +0.4
460,189 + MPMX26_00428 0.85 +0.6
460,189 + MPMX26_00428 0.85 -0.2
460,194 + MPMX26_00428 0.86 -1.0
460,222 + MPMX26_00428 0.89 -0.4
460,222 + MPMX26_00428 0.89 -0.9
460,224 + MPMX26_00428 0.90 -1.7
460,224 + MPMX26_00428 0.90 +0.7
460,224 + MPMX26_00428 0.90 -3.1
460,234 + -1.5
460,234 + +0.3
460,310 + -0.1
460,314 + -0.1
460,315 + -0.1
460,315 + -0.9
460,315 + +1.3
460,315 + +1.0
460,315 + -0.2
460,315 + +0.6

Or see this region's nucleotide sequence