Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF980 and GFF981 are separated by 66 nucleotides GFF981 and GFF982 are separated by 18 nucleotides
GFF980 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 718,370 to 719,977
GFF980
GFF981 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 720,044 to 722,041
GFF981
GFF982 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 722,060 to 723,049
GFF982
Position (kb) 720
721
722
723 Strain fitness (log2 ratio) -1
0
1 at 719.110 kb on + strand, within GFF980 at 719.110 kb on + strand, within GFF980 at 719.110 kb on + strand, within GFF980 at 719.237 kb on + strand, within GFF980 at 719.237 kb on + strand, within GFF980 at 719.238 kb on - strand, within GFF980 at 719.594 kb on + strand, within GFF980 at 719.594 kb on + strand, within GFF980 at 719.595 kb on - strand, within GFF980 at 719.595 kb on - strand, within GFF980 at 719.595 kb on - strand, within GFF980 at 719.595 kb on - strand, within GFF980 at 719.619 kb on - strand, within GFF980 at 719.619 kb on - strand, within GFF980 at 719.630 kb on + strand, within GFF980 at 720.049 kb on + strand at 720.493 kb on + strand, within GFF981 at 720.805 kb on + strand, within GFF981 at 720.845 kb on + strand, within GFF981 at 720.890 kb on + strand, within GFF981 at 720.891 kb on - strand, within GFF981 at 722.075 kb on - strand at 722.075 kb on - strand at 722.135 kb on + strand at 722.376 kb on - strand, within GFF982 at 722.459 kb on + strand, within GFF982 at 722.493 kb on - strand, within GFF982 at 722.748 kb on - strand, within GFF982
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 719,110 + GFF980 0.46 +0.0 719,110 + GFF980 0.46 +0.2 719,110 + GFF980 0.46 +1.5 719,237 + GFF980 0.54 -0.2 719,237 + GFF980 0.54 -0.5 719,238 - GFF980 0.54 +0.5 719,594 + GFF980 0.76 +1.5 719,594 + GFF980 0.76 -0.1 719,595 - GFF980 0.76 +0.1 719,595 - GFF980 0.76 +0.1 719,595 - GFF980 0.76 +0.7 719,595 - GFF980 0.76 +0.1 719,619 - GFF980 0.78 -0.1 719,619 - GFF980 0.78 +0.8 719,630 + GFF980 0.78 -0.7 720,049 + -0.5 720,493 + GFF981 0.22 +0.4 720,805 + GFF981 0.38 -0.9 720,845 + GFF981 0.40 -0.1 720,890 + GFF981 0.42 -0.1 720,891 - GFF981 0.42 +0.1 722,075 - -0.0 722,075 - +1.2 722,135 + +0.2 722,376 - GFF982 0.32 -0.1 722,459 + GFF982 0.40 -0.2 722,493 - GFF982 0.44 -0.2 722,748 - GFF982 0.69 -0.7
Or see this region's nucleotide sequence