Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF86

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF84 and GFF85 overlap by 1 nucleotidesGFF85 and GFF86 are separated by 14 nucleotidesGFF86 and GFF87 are separated by 1 nucleotides GFF84 - FOG: Ankyrin repeat, at 93,916 to 94,773 GFF84 GFF85 - Uncharacterized archaeal coiled-coil protein, at 94,773 to 95,426 GFF85 GFF86 - hypothetical protein, at 95,441 to 96,262 GFF86 GFF87 - hypothetical protein, at 96,264 to 97,442 GFF87 Position (kb) 95 96 97Strain fitness (log2 ratio) -1 0 1at 94.652 kb on - strand, within GFF84at 95.250 kb on + strand, within GFF85at 95.633 kb on + strand, within GFF86at 95.936 kb on + strand, within GFF86at 95.936 kb on + strand, within GFF86at 96.919 kb on + strand, within GFF87at 96.919 kb on + strand, within GFF87at 96.919 kb on + strand, within GFF87at 97.157 kb on - strand, within GFF87at 97.157 kb on - strand, within GFF87

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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94,652 - GFF84 0.86 -0.5
95,250 + GFF85 0.73 -0.2
95,633 + GFF86 0.23 -1.1
95,936 + GFF86 0.60 +1.3
95,936 + GFF86 0.60 -1.0
96,919 + GFF87 0.56 +0.3
96,919 + GFF87 0.56 -0.7
96,919 + GFF87 0.56 +0.1
97,157 - GFF87 0.76 +0.1
97,157 - GFF87 0.76 -0.4

Or see this region's nucleotide sequence