Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6 and GFF7 are separated by 60 nucleotides GFF7 and GFF8 overlap by 4 nucleotides GFF8 and GFF9 overlap by 1 nucleotides
GFF6 - Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation), at 3,417 to 4,706
GFF6
GFF7 - hypothetical protein, at 4,767 to 5,771
GFF7
GFF8 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 5,768 to 6,532
GFF8
GFF9 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 6,532 to 7,299
GFF9
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1 at 3.909 kb on + strand, within GFF6 at 3.909 kb on + strand, within GFF6 at 3.909 kb on + strand, within GFF6 at 3.909 kb on + strand, within GFF6 at 3.909 kb on + strand, within GFF6 at 3.910 kb on - strand, within GFF6 at 3.910 kb on - strand, within GFF6 at 3.910 kb on - strand, within GFF6 at 4.020 kb on + strand, within GFF6 at 4.302 kb on + strand, within GFF6 at 4.323 kb on + strand, within GFF6 at 4.392 kb on + strand, within GFF6 at 4.392 kb on + strand, within GFF6 at 4.866 kb on + strand at 4.912 kb on - strand, within GFF7 at 4.912 kb on - strand, within GFF7 at 4.922 kb on - strand, within GFF7 at 5.043 kb on + strand, within GFF7 at 5.043 kb on + strand, within GFF7 at 5.043 kb on + strand, within GFF7 at 5.044 kb on - strand, within GFF7 at 5.044 kb on - strand, within GFF7 at 5.044 kb on - strand, within GFF7 at 5.418 kb on + strand, within GFF7 at 5.418 kb on + strand, within GFF7 at 5.419 kb on - strand, within GFF7 at 5.419 kb on - strand, within GFF7 at 5.460 kb on + strand, within GFF7 at 5.885 kb on + strand, within GFF8 at 6.015 kb on - strand, within GFF8 at 6.592 kb on + strand at 6.592 kb on + strand at 6.592 kb on + strand at 6.593 kb on - strand at 6.593 kb on - strand at 6.658 kb on + strand, within GFF9 at 6.658 kb on + strand, within GFF9 at 6.659 kb on - strand, within GFF9 at 6.659 kb on - strand, within GFF9 at 6.685 kb on + strand, within GFF9 at 6.686 kb on - strand, within GFF9 at 6.709 kb on + strand, within GFF9 at 6.710 kb on - strand, within GFF9 at 6.710 kb on - strand, within GFF9
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 3,909 + GFF6 0.38 -0.1 3,909 + GFF6 0.38 +0.1 3,909 + GFF6 0.38 -1.0 3,909 + GFF6 0.38 +1.1 3,909 + GFF6 0.38 -0.3 3,910 - GFF6 0.38 -0.3 3,910 - GFF6 0.38 -0.0 3,910 - GFF6 0.38 -0.2 4,020 + GFF6 0.47 +0.1 4,302 + GFF6 0.69 -0.0 4,323 + GFF6 0.70 +0.1 4,392 + GFF6 0.76 +0.3 4,392 + GFF6 0.76 +0.2 4,866 + +0.3 4,912 - GFF7 0.14 -0.1 4,912 - GFF7 0.14 -1.6 4,922 - GFF7 0.15 -0.2 5,043 + GFF7 0.27 +0.1 5,043 + GFF7 0.27 +0.9 5,043 + GFF7 0.27 -0.0 5,044 - GFF7 0.28 -0.3 5,044 - GFF7 0.28 +0.8 5,044 - GFF7 0.28 +0.5 5,418 + GFF7 0.65 -0.0 5,418 + GFF7 0.65 +0.2 5,419 - GFF7 0.65 +0.1 5,419 - GFF7 0.65 +0.7 5,460 + GFF7 0.69 +0.1 5,885 + GFF8 0.15 -0.2 6,015 - GFF8 0.32 +0.1 6,592 + +0.1 6,592 + -2.6 6,592 + +0.1 6,593 - -0.0 6,593 - -0.5 6,658 + GFF9 0.16 +0.5 6,658 + GFF9 0.16 -0.3 6,659 - GFF9 0.17 -0.9 6,659 - GFF9 0.17 -0.8 6,685 + GFF9 0.20 +0.2 6,686 - GFF9 0.20 +0.4 6,709 + GFF9 0.23 -0.2 6,710 - GFF9 0.23 -1.1 6,710 - GFF9 0.23 +0.2
Or see this region's nucleotide sequence