Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF657 and GFF658 are separated by 248 nucleotides GFF658 and GFF659 are separated by 102 nucleotides GFF659 and GFF660 are separated by 108 nucleotides
GFF657 - Probable tonB-dependent receptor yncD precursor, at 338,800 to 340,893
GFF657
GFF658 - Glutathione S-transferase N-terminal domain protein (EC 2.5.1.18), at 341,142 to 341,786
GFF658
GFF659 - hypothetical protein, at 341,889 to 342,281
GFF659
GFF660 - Copper metallochaperone, bacterial analog of Cox17 protein, at 342,390 to 342,890
GFF660
Position (kb) 341
342 Strain fitness (log2 ratio) -2
-1
0
1
2 at 340.460 kb on - strand, within GFF657 at 340.583 kb on - strand, within GFF657 at 340.789 kb on + strand at 340.790 kb on - strand at 340.790 kb on - strand at 340.988 kb on + strand at 340.988 kb on + strand at 340.988 kb on + strand at 340.989 kb on - strand at 341.039 kb on + strand at 341.236 kb on + strand, within GFF658 at 341.236 kb on + strand, within GFF658 at 341.263 kb on + strand, within GFF658 at 341.264 kb on - strand, within GFF658 at 341.264 kb on - strand, within GFF658 at 341.264 kb on - strand, within GFF658 at 341.264 kb on - strand, within GFF658 at 341.264 kb on - strand, within GFF658 at 341.275 kb on + strand, within GFF658 at 341.275 kb on + strand, within GFF658 at 341.275 kb on + strand, within GFF658 at 341.275 kb on + strand, within GFF658 at 341.276 kb on - strand, within GFF658 at 341.360 kb on - strand, within GFF658 at 341.509 kb on + strand, within GFF658 at 341.509 kb on + strand, within GFF658 at 341.509 kb on + strand, within GFF658 at 341.509 kb on + strand, within GFF658 at 341.576 kb on - strand, within GFF658 at 341.590 kb on + strand, within GFF658 at 341.642 kb on - strand, within GFF658 at 341.749 kb on + strand at 341.750 kb on - strand at 341.750 kb on - strand at 341.750 kb on - strand at 341.752 kb on + strand at 341.752 kb on + strand at 341.753 kb on - strand at 341.753 kb on - strand at 341.799 kb on + strand at 341.799 kb on + strand at 341.799 kb on + strand at 341.800 kb on - strand at 341.825 kb on + strand at 341.825 kb on + strand at 341.825 kb on + strand at 341.826 kb on - strand at 342.703 kb on - strand, within GFF660 at 342.703 kb on - strand, within GFF660
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 340,460 - GFF657 0.79 +0.3 340,583 - GFF657 0.85 +0.2 340,789 + +0.1 340,790 - -0.5 340,790 - -0.9 340,988 + -2.1 340,988 + +0.3 340,988 + -0.4 340,989 - -0.6 341,039 + -0.1 341,236 + GFF658 0.15 +0.8 341,236 + GFF658 0.15 +0.8 341,263 + GFF658 0.19 +0.6 341,264 - GFF658 0.19 +1.1 341,264 - GFF658 0.19 +0.9 341,264 - GFF658 0.19 -0.2 341,264 - GFF658 0.19 +0.0 341,264 - GFF658 0.19 +1.9 341,275 + GFF658 0.21 +0.0 341,275 + GFF658 0.21 +0.1 341,275 + GFF658 0.21 +0.1 341,275 + GFF658 0.21 -0.4 341,276 - GFF658 0.21 +0.1 341,360 - GFF658 0.34 -0.5 341,509 + GFF658 0.57 -0.1 341,509 + GFF658 0.57 +1.1 341,509 + GFF658 0.57 +0.8 341,509 + GFF658 0.57 +0.4 341,576 - GFF658 0.67 -0.1 341,590 + GFF658 0.69 -0.7 341,642 - GFF658 0.78 -1.3 341,749 + -0.3 341,750 - +0.4 341,750 - -0.4 341,750 - +0.1 341,752 + -0.5 341,752 + -0.6 341,753 - +0.0 341,753 - -0.2 341,799 + +0.1 341,799 + -0.1 341,799 + +0.3 341,800 - +0.1 341,825 + +0.2 341,825 + -0.0 341,825 + +0.5 341,826 - -0.1 342,703 - GFF660 0.62 -0.1 342,703 - GFF660 0.62 +1.7
Or see this region's nucleotide sequence