Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF643

Experiment: Ying_Others16 rep B; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF640 and GFF641 are separated by 176 nucleotidesGFF641 and GFF642 are separated by 102 nucleotidesGFF642 and GFF643 overlap by 1 nucleotidesGFF643 and GFF644 are separated by 29 nucleotidesGFF644 and GFF645 are separated by 64 nucleotides GFF640 - Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7), at 317,695 to 318,639 GFF640 GFF641 - Rubredoxin, at 318,816 to 318,968 GFF641 GFF642 - twitching motility protein PilG, at 319,071 to 319,466 GFF642 GFF643 - twitching motility protein PilH, at 319,466 to 319,831 GFF643 GFF644 - type IV pili signal transduction protein PilI, at 319,861 to 320,400 GFF644 GFF645 - twitching motility protein PilJ, at 320,465 to 322,711 GFF645 Position (kb) 319 320Strain fitness (log2 ratio) -2 -1 0 1 2at 318.631 kb on - strandat 318.643 kb on + strandat 318.643 kb on + strandat 318.643 kb on + strandat 318.757 kb on + strandat 318.757 kb on + strandat 318.758 kb on - strandat 318.758 kb on - strandat 318.758 kb on - strandat 318.758 kb on - strandat 318.758 kb on - strandat 318.788 kb on + strandat 318.788 kb on + strandat 318.788 kb on + strandat 318.788 kb on + strandat 318.788 kb on + strandat 318.789 kb on - strandat 318.790 kb on + strandat 318.791 kb on - strandat 318.791 kb on - strandat 318.791 kb on - strandat 319.010 kb on + strandat 319.016 kb on + strandat 319.016 kb on + strandat 319.017 kb on - strandat 319.017 kb on - strandat 319.017 kb on - strandat 319.062 kb on + strandat 319.063 kb on - strandat 319.063 kb on - strandat 319.118 kb on + strand, within GFF642at 319.118 kb on + strand, within GFF642at 319.118 kb on + strand, within GFF642at 319.118 kb on + strand, within GFF642at 319.119 kb on - strand, within GFF642at 319.119 kb on - strand, within GFF642at 319.119 kb on - strand, within GFF642at 319.215 kb on + strand, within GFF642at 319.216 kb on - strand, within GFF642at 319.216 kb on - strand, within GFF642at 319.386 kb on + strand, within GFF642at 319.386 kb on + strand, within GFF642at 319.387 kb on - strand, within GFF642at 319.387 kb on - strand, within GFF642at 319.387 kb on - strand, within GFF642at 319.387 kb on - strand, within GFF642at 319.387 kb on - strand, within GFF642at 319.403 kb on + strand, within GFF642at 319.403 kb on + strand, within GFF642at 319.403 kb on + strand, within GFF642at 319.403 kb on + strand, within GFF642at 319.547 kb on + strand, within GFF643at 319.548 kb on - strand, within GFF643at 319.688 kb on + strand, within GFF643at 319.688 kb on + strand, within GFF643at 319.689 kb on - strand, within GFF643at 319.689 kb on - strand, within GFF643at 319.689 kb on - strand, within GFF643at 319.689 kb on - strand, within GFF643at 319.772 kb on + strand, within GFF643at 319.773 kb on - strand, within GFF643at 319.773 kb on - strand, within GFF643at 319.773 kb on - strand, within GFF643at 319.979 kb on - strand, within GFF644at 320.041 kb on + strand, within GFF644at 320.042 kb on - strand, within GFF644at 320.042 kb on - strand, within GFF644at 320.042 kb on - strand, within GFF644at 320.042 kb on - strand, within GFF644at 320.056 kb on + strand, within GFF644at 320.056 kb on + strand, within GFF644at 320.057 kb on - strand, within GFF644at 320.299 kb on + strand, within GFF644at 320.299 kb on + strand, within GFF644at 320.299 kb on + strand, within GFF644at 320.299 kb on + strand, within GFF644at 320.300 kb on - strand, within GFF644at 320.300 kb on - strand, within GFF644at 320.462 kb on + strandat 320.462 kb on + strandat 320.462 kb on + strandat 320.463 kb on - strandat 320.463 kb on - strandat 320.463 kb on - strandat 320.463 kb on - strandat 320.463 kb on - strandat 320.463 kb on - strandat 320.470 kb on + strandat 320.470 kb on + strandat 320.470 kb on + strandat 320.470 kb on + strandat 320.470 kb on + strandat 320.471 kb on - strandat 320.471 kb on - strandat 320.471 kb on - strandat 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.753 kb on + strand, within GFF645at 320.754 kb on - strand, within GFF645at 320.754 kb on - strand, within GFF645at 320.754 kb on - strand, within GFF645

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
remove
318,631 - -0.1
318,643 + -0.2
318,643 + -0.2
318,643 + +0.2
318,757 + -0.5
318,757 + -0.2
318,758 - -0.5
318,758 - -1.1
318,758 - +0.1
318,758 - -0.3
318,758 - -0.5
318,788 + -0.1
318,788 + -0.4
318,788 + +0.3
318,788 + -0.3
318,788 + -0.0
318,789 - -2.4
318,790 + -0.4
318,791 - -2.7
318,791 - -2.6
318,791 - -2.2
319,010 + -0.6
319,016 + -0.4
319,016 + -0.4
319,017 - +0.7
319,017 - +0.4
319,017 - +0.3
319,062 + -0.5
319,063 - -0.4
319,063 - -0.3
319,118 + GFF642 0.12 +1.0
319,118 + GFF642 0.12 +0.2
319,118 + GFF642 0.12 +2.1
319,118 + GFF642 0.12 +2.0
319,119 - GFF642 0.12 +0.9
319,119 - GFF642 0.12 -0.8
319,119 - GFF642 0.12 +1.0
319,215 + GFF642 0.36 +0.6
319,216 - GFF642 0.37 +0.2
319,216 - GFF642 0.37 +0.2
319,386 + GFF642 0.80 +0.1
319,386 + GFF642 0.80 -0.2
319,387 - GFF642 0.80 +0.3
319,387 - GFF642 0.80 +1.0
319,387 - GFF642 0.80 +0.1
319,387 - GFF642 0.80 +0.4
319,387 - GFF642 0.80 -0.2
319,403 + GFF642 0.84 +0.8
319,403 + GFF642 0.84 +0.8
319,403 + GFF642 0.84 -0.4
319,403 + GFF642 0.84 +0.2
319,547 + GFF643 0.22 -0.4
319,548 - GFF643 0.22 -0.6
319,688 + GFF643 0.61 +0.2
319,688 + GFF643 0.61 -0.4
319,689 - GFF643 0.61 +0.4
319,689 - GFF643 0.61 -0.4
319,689 - GFF643 0.61 -0.9
319,689 - GFF643 0.61 +1.2
319,772 + GFF643 0.84 -1.6
319,773 - GFF643 0.84 +0.4
319,773 - GFF643 0.84 +0.1
319,773 - GFF643 0.84 +0.0
319,979 - GFF644 0.22 -0.7
320,041 + GFF644 0.33 +1.0
320,042 - GFF644 0.34 +0.0
320,042 - GFF644 0.34 -0.1
320,042 - GFF644 0.34 +0.6
320,042 - GFF644 0.34 -0.0
320,056 + GFF644 0.36 +0.3
320,056 + GFF644 0.36 +0.4
320,057 - GFF644 0.36 +0.1
320,299 + GFF644 0.81 +0.3
320,299 + GFF644 0.81 +0.1
320,299 + GFF644 0.81 +0.2
320,299 + GFF644 0.81 +1.0
320,300 - GFF644 0.81 +1.1
320,300 - GFF644 0.81 +0.1
320,462 + +0.4
320,462 + +0.5
320,462 + +0.7
320,463 - -0.1
320,463 - -0.1
320,463 - +0.2
320,463 - +0.5
320,463 - +0.1
320,463 - +0.5
320,470 + +0.3
320,470 + -0.2
320,470 + +0.5
320,470 + +0.7
320,470 + +0.8
320,471 - -0.0
320,471 - +0.4
320,471 - +0.3
320,753 + GFF645 0.13 +0.6
320,753 + GFF645 0.13 +0.5
320,753 + GFF645 0.13 +1.7
320,753 + GFF645 0.13 +0.1
320,753 + GFF645 0.13 -0.1
320,753 + GFF645 0.13 +0.2
320,753 + GFF645 0.13 +1.0
320,754 - GFF645 0.13 +0.8
320,754 - GFF645 0.13 +0.2
320,754 - GFF645 0.13 -0.1

Or see this region's nucleotide sequence