Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5680

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
2,700,608	+				+0.8
2,700,613	-				-0.1
2,700,613	-				+0.9
2,700,664	+				-0.8
2,700,910	+		GFF5679	0.19	-0.6
2,700,910	+		GFF5679	0.19	-0.2
2,700,910	+		GFF5679	0.19	-0.1
2,700,911	-		GFF5679	0.19	+1.0
2,701,003	+		GFF5679	0.39	-0.8
2,701,003	+		GFF5679	0.39	+0.0
2,701,003	+		GFF5679	0.39	-0.3
2,701,004	-		GFF5679	0.39	+0.5
2,701,421	+				-0.5
2,701,455	+				-0.7
2,701,455	+				+1.1
2,701,520	-				+0.3
2,701,533	+				+0.1
2,701,533	+				-0.2
2,701,533	+				+0.1
2,701,533	+				+0.1
2,701,533	+				+0.0
2,701,533	+				+0.6
2,701,533	+				-0.1
2,701,533	+				+0.2
2,701,533	+				-0.0
2,701,533	+				+0.4
2,701,534	-				-1.3
2,701,534	-				+0.8
2,701,534	-				+0.5
2,701,534	-				-0.3
2,701,534	-				+1.2
2,701,535	+				-0.1
2,701,535	+				+0.1
2,701,535	+				-0.2
2,701,536	-				+0.5
2,701,536	-				-0.6
2,701,558	-				-0.1
2,701,636	-				-0.3
2,701,884	+		GFF5680	0.40	-0.7
2,701,962	+		GFF5680	0.49	-0.2
2,701,963	-		GFF5680	0.50	-1.0
2,701,963	-		GFF5680	0.50	-1.9
2,701,963	-		GFF5680	0.50	-1.1
2,702,205	+		GFF5680	0.79	+0.1
2,702,205	+		GFF5680	0.79	+0.3
2,702,206	-		GFF5680	0.79	-0.1
2,702,613	+		GFF5681	0.11	-0.7
2,702,614	-		GFF5681	0.11	-0.2
2,702,741	-		GFF5681	0.22	+0.1
2,702,809	-		GFF5681	0.28	-0.0
2,702,809	-		GFF5681	0.28	+0.6
2,702,938	-		GFF5681	0.39	-0.0
2,703,156	+		GFF5681	0.57	+1.3
2,703,157	-		GFF5681	0.57	-0.1
2,703,157	-		GFF5681	0.57	-0.4
2,703,231	+		GFF5681	0.64	+1.2
2,703,300	+		GFF5681	0.69	+0.3
2,703,370	-		GFF5681	0.75	-0.5