Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5373

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
2,373,156	-		GFF5371	0.75	-0.2
2,373,180	-		GFF5371	0.77	-0.4
2,373,471	+				+0.6
2,373,472	-				-0.1
2,374,186	+				+0.3
2,374,465	+		GFF5373	0.14	-0.0
2,374,465	+		GFF5373	0.14	+1.5
2,374,636	+		GFF5373	0.22	-0.2
2,374,636	+		GFF5373	0.22	-0.5
2,374,637	-		GFF5373	0.22	+1.3
2,374,637	-		GFF5373	0.22	+1.0
2,374,637	-		GFF5373	0.22	-0.5
2,374,637	-		GFF5373	0.22	-1.3
2,374,768	+		GFF5373	0.27	+0.3
2,374,768	+		GFF5373	0.27	+0.2
2,374,768	+		GFF5373	0.27	-0.2
2,374,769	-		GFF5373	0.27	+0.1
2,374,789	+		GFF5373	0.28	-0.8
2,375,158	+		GFF5373	0.43	-0.3
2,375,158	+		GFF5373	0.43	-0.0
2,375,182	+		GFF5373	0.44	-0.5
2,375,182	+		GFF5373	0.44	-0.1
2,375,183	-		GFF5373	0.45	+0.5
2,375,200	+		GFF5373	0.45	+1.3
2,375,201	-		GFF5373	0.45	-0.6
2,375,201	-		GFF5373	0.45	-0.8
2,375,278	+		GFF5373	0.48	-1.4
2,375,396	-		GFF5373	0.53	-0.3
2,375,521	+		GFF5373	0.59	+0.1
2,375,522	-		GFF5373	0.59	-0.2
2,375,522	-		GFF5373	0.59	-2.0
2,375,965	+		GFF5373	0.77	+0.2
2,375,981	-		GFF5373	0.78	+0.6
2,375,981	-		GFF5373	0.78	+0.1
2,376,226	+		GFF5373	0.88	-0.1
2,376,226	+		GFF5373	0.88	-0.3
2,376,227	-		GFF5373	0.88	-0.4
2,376,271	+				-0.8
2,376,272	-				+1.1
2,376,525	+				-1.1
2,376,526	-				-0.4
2,376,526	-				-1.2
2,376,963	+		GFF5374	0.56	-0.6
2,376,963	+		GFF5374	0.56	+0.7
2,376,964	-		GFF5374	0.56	+0.2
2,377,033	-		GFF5374	0.65	-0.3
2,377,205	-		GFF5374	0.86	+0.2
2,377,377	-				-0.8
2,377,407	+				+0.1
2,377,407	+				-0.3
2,377,408	-				-0.4
2,377,408	-				-0.2
2,377,408	-				-0.2