Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5207

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
2,221,332	+				-0.5
2,221,332	+				-0.3
2,221,405	+		GFF5206	0.11	+0.4
2,221,405	+		GFF5206	0.11	-0.1
2,221,406	-		GFF5206	0.11	+1.5
2,221,406	-		GFF5206	0.11	-0.1
2,221,406	-		GFF5206	0.11	-0.1
2,221,967	-		GFF5206	0.73	-1.0
2,221,967	-		GFF5206	0.73	-0.3
2,221,970	-		GFF5206	0.74	+0.3
2,221,979	-		GFF5206	0.75	+0.4
2,222,254	+				+0.3
2,222,255	-				-0.4
2,222,255	-				+0.2
2,222,536	+		GFF5207	0.36	-0.2
2,222,536	+		GFF5207	0.36	+1.1
2,222,605	+		GFF5207	0.45	+0.8
2,222,605	+		GFF5207	0.45	-0.1
2,222,605	+		GFF5207	0.45	+0.2
2,222,605	+		GFF5207	0.45	+0.4
2,222,605	+		GFF5207	0.45	-0.1
2,222,605	+		GFF5207	0.45	-0.3
2,222,606	-		GFF5207	0.45	+0.2
2,223,028	+				+0.4
2,223,028	+				+0.0
2,223,028	+				-0.0
2,223,028	+				-0.5
2,223,029	-				+0.1
2,223,050	+				+0.2
2,223,051	-				-0.4
2,223,051	-				+0.9
2,223,051	-				-0.6
2,223,132	+				+0.2
2,223,133	-				+0.1
2,223,133	-				-0.3
2,223,225	+				+1.1
2,223,225	+				+0.4
2,223,225	+				+0.3
2,223,225	+				+2.2
2,223,226	-				-0.4
2,223,255	+				-0.0
2,223,255	+				+0.1
2,223,256	-				-0.1
2,223,280	-				+0.1
2,223,280	-				+0.2
2,223,591	+		GFF5208	0.22	+0.3
2,223,591	+		GFF5208	0.22	-0.4
2,223,591	+		GFF5208	0.22	+0.4
2,223,592	-		GFF5208	0.22	+0.5
2,223,592	-		GFF5208	0.22	+0.6
2,223,592	-		GFF5208	0.22	-0.2
2,223,592	-		GFF5208	0.22	+0.3
2,223,690	+		GFF5208	0.27	+0.3
2,223,690	+		GFF5208	0.27	-0.4
2,223,691	-		GFF5208	0.27	-1.1
2,223,798	+		GFF5208	0.34	+1.2
2,223,798	+		GFF5208	0.34	+0.8
2,223,798	+		GFF5208	0.34	-0.2
2,223,799	-		GFF5208	0.34	-1.2
2,223,888	+		GFF5208	0.39	+0.4
2,223,889	-		GFF5208	0.39	-0.1
2,223,987	+		GFF5208	0.45	-0.8
2,223,987	+		GFF5208	0.45	-0.5
2,223,988	-		GFF5208	0.45	+0.0
2,223,988	-		GFF5208	0.45	+0.0
2,223,988	-		GFF5208	0.45	+0.4
2,224,005	+		GFF5208	0.46	+0.2