Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF487

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF486 and GFF487 are separated by 11 nucleotidesGFF487 and GFF488 overlap by 4 nucleotides GFF486 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 151,802 to 152,968 GFF486 GFF487 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 152,980 to 156,111 GFF487 GFF488 - RND multidrug efflux transporter; Acriflavin resistance protein, at 156,108 to 159,239 GFF488 Position (kb) 152 153 154 155 156 157Strain fitness (log2 ratio) -1 0 1at 152.735 kb on + strand, within GFF486at 152.735 kb on + strand, within GFF486at 152.735 kb on + strand, within GFF486at 152.735 kb on + strand, within GFF486at 152.736 kb on - strand, within GFF486at 152.736 kb on - strand, within GFF486at 152.736 kb on - strand, within GFF486at 152.736 kb on - strand, within GFF486at 152.736 kb on - strand, within GFF486at 152.736 kb on - strand, within GFF486at 152.736 kb on - strand, within GFF486at 152.741 kb on + strand, within GFF486at 152.741 kb on + strand, within GFF486at 152.741 kb on + strand, within GFF486at 152.741 kb on + strand, within GFF486at 152.741 kb on + strand, within GFF486at 152.741 kb on + strand, within GFF486at 152.742 kb on - strand, within GFF486at 152.742 kb on - strand, within GFF486at 152.742 kb on - strand, within GFF486at 152.742 kb on - strand, within GFF486at 152.742 kb on - strand, within GFF486at 153.389 kb on - strand, within GFF487at 153.724 kb on + strand, within GFF487at 154.658 kb on - strand, within GFF487at 155.021 kb on - strand, within GFF487at 155.021 kb on - strand, within GFF487at 155.338 kb on + strand, within GFF487at 155.338 kb on + strand, within GFF487at 155.338 kb on + strand, within GFF487at 155.338 kb on + strand, within GFF487at 155.339 kb on - strand, within GFF487at 155.339 kb on - strand, within GFF487at 155.339 kb on - strand, within GFF487at 155.339 kb on - strand, within GFF487at 155.641 kb on + strand, within GFF487at 155.642 kb on - strand, within GFF487at 155.642 kb on - strand, within GFF487at 155.642 kb on - strand, within GFF487at 155.642 kb on - strand, within GFF487at 155.642 kb on - strand, within GFF487at 155.662 kb on + strand, within GFF487at 155.662 kb on + strand, within GFF487at 155.662 kb on + strand, within GFF487at 155.663 kb on - strand, within GFF487at 156.433 kb on + strand, within GFF488at 156.434 kb on - strand, within GFF488at 156.495 kb on + strand, within GFF488

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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152,735 + GFF486 0.80 -0.1
152,735 + GFF486 0.80 +0.6
152,735 + GFF486 0.80 +0.2
152,735 + GFF486 0.80 -0.7
152,736 - GFF486 0.80 -0.5
152,736 - GFF486 0.80 +0.1
152,736 - GFF486 0.80 -0.4
152,736 - GFF486 0.80 +0.9
152,736 - GFF486 0.80 +0.1
152,736 - GFF486 0.80 +0.8
152,736 - GFF486 0.80 +0.0
152,741 + GFF486 0.80 -0.4
152,741 + GFF486 0.80 -0.7
152,741 + GFF486 0.80 -0.5
152,741 + GFF486 0.80 +0.5
152,741 + GFF486 0.80 +0.6
152,741 + GFF486 0.80 -0.1
152,742 - GFF486 0.81 +0.2
152,742 - GFF486 0.81 +0.2
152,742 - GFF486 0.81 +0.6
152,742 - GFF486 0.81 -0.3
152,742 - GFF486 0.81 -0.9
153,389 - GFF487 0.13 -0.3
153,724 + GFF487 0.24 -0.2
154,658 - GFF487 0.54 +0.8
155,021 - GFF487 0.65 -0.3
155,021 - GFF487 0.65 +0.1
155,338 + GFF487 0.75 +0.9
155,338 + GFF487 0.75 +0.2
155,338 + GFF487 0.75 +0.7
155,338 + GFF487 0.75 -0.3
155,339 - GFF487 0.75 -1.0
155,339 - GFF487 0.75 +0.1
155,339 - GFF487 0.75 +0.4
155,339 - GFF487 0.75 -0.2
155,641 + GFF487 0.85 -0.1
155,642 - GFF487 0.85 +1.7
155,642 - GFF487 0.85 -0.3
155,642 - GFF487 0.85 -0.0
155,642 - GFF487 0.85 +1.1
155,642 - GFF487 0.85 +0.1
155,662 + GFF487 0.86 +0.1
155,662 + GFF487 0.86 +0.4
155,662 + GFF487 0.86 +0.5
155,663 - GFF487 0.86 -0.0
156,433 + GFF488 0.10 -0.4
156,434 - GFF488 0.10 -0.0
156,495 + GFF488 0.12 -0.2

Or see this region's nucleotide sequence